RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FAM72BQ86X60 149 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 CCNYQ8ND76 341 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 PLD4Q96BZ4 506 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 CHMP6Q96FZ7 201 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 TCF25Q9BQ70 676 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 RETREG1Q9H6L5 497 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 ETNK2Q9NVF9 386 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 ACTL7BQ9Y614 415 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 I6L893 689 aaPredicted RBP18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 CHADO15335 359 aa18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 IGLV3-27P01718 113 aa18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 HARS2P49590 506 aaKnown RBP18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 SEC24CP53992 1094 aa18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 BASP1P80723 227 aaKnown RBP18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 SLC10A2Q12908 348 aaPredicted RBP18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 NR1H3Q13133 447 aa18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 PRKD1Q15139 912 aaPredicted RBP18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 MANEALQ5VSG8 457 aa18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 CENPUQ71F23 418 aa18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 DNAJB7Q7Z6W7 309 aaPredicted RBP18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 LRRC49Q8IUZ0 686 aa18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 GLIS1Q8NBF1 620 aa18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 KLHL5Q96PQ7 755 aa18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 NINJ2Q9NZG7 142 aa18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 PPARGC1AQ9UBK2 798 aaKnown RBP18.7■□□□□ 0.58
CCDC88C-203ENST00000389856 PLXNA4Q9HCM2 1894 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 E9PAM4 449 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 C5orf67F2Z3F1 127 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 OPHN1O60890 802 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 GLUD1P00367 558 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 CPP00450 1065 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 CHN1P15882 459 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 CHKAP35790 457 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 FDFT1P37268 417 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 SLC11A2P49281 568 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 ARL4CP56559 192 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 AP1B1Q10567 949 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 PDE12Q6L8Q7 609 aaKnown RBP18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 ELMSAN1Q6PJG2 1045 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 EPS8L3Q8TE67 593 aaKnown RBP18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 GCNAQ96QF7 691 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 VAT1Q99536 393 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 DDX50Q9BQ39 737 aaKnown RBP18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 ADAM7Q9H2U9 754 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 CCSER2Q9H7U1 834 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 TLR9Q9NR96 1032 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 INTS9Q9NV88 658 aaKnown RBP18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 FARP1Q9Y4F1 1045 aaPredicted RBP18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 HS3ST4Q9Y661 456 aa18.69■□□□□ 0.58
CCDC88C-203ENST00000389856 A0A0A0MRY4 1105 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 LINC01553A4QN01 128 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 WASH4PA8MWX3 477 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 TGM5O43548 720 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 CDH16O75309 829 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 SARNPP82979 210 aaKnown RBP18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 GALNT2Q10471 571 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 GKAP1Q5VSY0 366 aaPredicted RBP18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 OTUD6BQ8N6M0 293 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 AZIN2Q96A70 460 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 HDAC11Q96DB2 347 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 SPATA13Q96N96 652 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 SELENOSQ9BQE4 189 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 ZYG11BQ9C0D3 744 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 NSRP1Q9H0G5 558 aaKnown RBP18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 PRDM12Q9H4Q4 367 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 C10orf88Q9H8K7 445 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 DPP7Q9UHL4 492 aa18.68■□□□□ 0.58
CCDC88C-203ENST00000389856 ACSL3O95573 720 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 FGF19O95750 216 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 RHOQP17081 205 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 IFI35P80217 286 aaPredicted RBP18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 PPIDQ08752 370 aaKnown RBP18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 SKIDA1Q1XH10 827 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 C6orf89Q6UWU4 347 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 CPLX4Q7Z7G2 160 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 PRUNE1Q86TP1 453 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 C10orf67Q8IYJ2 551 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 CACNA2D3Q8IZS8 1091 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 PDIK1LQ8N165 341 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 RTL3Q8N8U3 475 aaKnown RBP18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 MRPL43Q8N983 215 aaKnown RBP18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 ATXN2LQ8WWM7 1075 aaKnown RBP18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 PRCCQ92733 491 aaPredicted RBP18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 RBM15Q96T37 977 aaKnown RBP eCLIP18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 RAB6BQ9NRW1 208 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 MAP3K6O95382 1288 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 TBX18O95935 607 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 PFKLP17858 780 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 DRD4P21917 467 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 MAGEA4P43358 317 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 SLC20A2Q08357 652 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 RASA2Q15283 850 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 HIF1AQ16665 826 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 KYNUQ16719 465 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 MS4A13Q5J8X5 152 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 ITPRIPL1Q6GPH6 555 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 TIGD7Q6NT04 549 aaPredicted RBP18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 LILRA6Q6PI73 481 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 TAX1BP1Q86VP1 789 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 TDRPQ86YL5 185 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms