RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ZNF840PA6NDX5 716 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 FAM72CH0Y354 149 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 H3BNC9 293 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 OAS1P00973 400 aaKnown RBP12.79□□□□□ -0.36
CIITA-202ENST00000381835 NQO1P15559 274 aaKnown RBP12.79□□□□□ -0.36
CIITA-202ENST00000381835 CLCN4P51793 760 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 KCNJ2P63252 427 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 SCAPQ12770 1279 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 TFDP2Q14188 446 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 ACCSLQ4AC99 568 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 FAM72AQ5TYM5 149 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 PPP2R2DQ66LE6 453 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 FAM72DQ6L9T8 149 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 NPNTQ6UXI9 565 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 ITIH5Q86UX2 942 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 FAM72BQ86X60 149 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 ANKRD42Q8N9B4 389 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 C12orf50Q8NA57 414 aaPredicted RBP12.79□□□□□ -0.36
CIITA-202ENST00000381835 CCHCR1Q8TD31 782 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 ARNTL2Q8WYA1 636 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 MIEF2Q96C03 454 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 STAMBPL1Q96FJ0 436 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 TRMT2BQ96GJ1 504 aaKnown RBP12.79□□□□□ -0.36
CIITA-202ENST00000381835 RSRC1Q96IZ7 334 aaKnown RBP12.79□□□□□ -0.36
CIITA-202ENST00000381835 CSPG4P5Q96PW8 444 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 SIK2Q9H0K1 926 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 ASIC3Q9UHC3 531 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 DNPEPQ9ULA0 475 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 TLR6Q9Y2C9 796 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 PER2O15055 1255 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 CREB1P16220 341 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 AMPD1P23109 780 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 TBX4P57082 545 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 NCALDP61601 193 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 OTUD4Q01804 1114 aaKnown RBP12.79□□□□□ -0.36
CIITA-202ENST00000381835 CCNG2Q16589 344 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 BRMS1LQ5PSV4 323 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 C1orf228Q6PIY5 440 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 RBM23Q86U06 439 aaKnown RBP12.79□□□□□ -0.36
CIITA-202ENST00000381835 PQLC3Q8N755 202 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 GBP7Q8N8V2 638 aaPredicted RBP12.79□□□□□ -0.36
CIITA-202ENST00000381835 ACTL9Q8TC94 416 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 OVCA2Q8WZ82 227 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 ZNF334Q9HCZ1 680 aaPredicted RBP12.79□□□□□ -0.36
CIITA-202ENST00000381835 MLXIPLQ9NP71 852 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 ARHGEF38Q9NXL2 777 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 WHRNQ9P202 907 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 UXTQ9UBK9 157 aaPredicted RBP12.79□□□□□ -0.36
CIITA-202ENST00000381835 OR12D3Q9UGF7 316 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 HEY1Q9Y5J3 304 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 NUP205Q92621 2012 aa12.79□□□□□ -0.36
CIITA-202ENST00000381835 SLC12A8A0AV02 714 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 APOC4-APOC2K7ER74 178 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 EEF2KO00418 725 aaKnown RBP12.78□□□□□ -0.36
CIITA-202ENST00000381835 APOL1O14791 398 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 MAP3K6O95382 1288 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 APOC2P02655 101 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 PECAM1P16284 738 aaPredicted RBP12.78□□□□□ -0.36
CIITA-202ENST00000381835 ATP5C1P36542 298 aaKnown RBP12.78□□□□□ -0.36
CIITA-202ENST00000381835 HECTD3Q5T447 861 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 VSIG1Q86XK7 387 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 SLC22A17Q8WUG5 538 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 FAF2Q96CS3 445 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 EBF2Q9HAK2 575 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 XPO7Q9UIA9 1087 aaKnown RBP12.78□□□□□ -0.36
CIITA-202ENST00000381835 L3MBTL1Q9Y468 752 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 H3BRJ5 948 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 CCL16O15467 120 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 LIASO43766 372 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 PAGE1O75459 146 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 EPCAMP16422 314 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 ITIH2P19823 946 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 CHKAP35790 457 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 PPP2R5DQ14738 602 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 CRYMQ14894 314 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 GALNTL6Q49A17 601 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 PPM1LQ5SGD2 360 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 SPATA21Q7Z572 469 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 ELMOD1Q8N336 334 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 PLD5Q8N7P1 536 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 TTC13Q8NBP0 860 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 GDAP1Q8TB36 358 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 KLHL29Q96CT2 875 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 FCRL2Q96LA5 508 aaPredicted RBP12.78□□□□□ -0.36
CIITA-202ENST00000381835 SLC28A3Q9HAS3 691 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 MAN1C1Q9NR34 630 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 ETNK2Q9NVF9 386 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 CTNNAL1Q9UBT7 734 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 ZNF148Q9UQR1 794 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 ARL2BPQ9Y2Y0 163 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 MFHAS1Q9Y4C4 1052 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 ASB3Q9Y575 518 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 OBSL1O75147 1896 aa12.78□□□□□ -0.36
CIITA-202ENST00000381835 C2orf78A6NCI8 922 aa12.77□□□□□ -0.36
CIITA-202ENST00000381835 ZNF487B1APH4 448 aa12.77□□□□□ -0.36
CIITA-202ENST00000381835 COCHO43405 550 aa12.77□□□□□ -0.36
CIITA-202ENST00000381835 CLASP2O75122 1294 aaKnown RBP12.77□□□□□ -0.36
CIITA-202ENST00000381835 RFPL2O75678 378 aa12.77□□□□□ -0.36
CIITA-202ENST00000381835 ANP32DO95626 131 aa12.77□□□□□ -0.36
CIITA-202ENST00000381835 SRGAP2BP0DMP2 458 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms