RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CYLC1P35663 651 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 NEK2P51955 445 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MYL6P60660 151 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ZNF200P98182 395 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 PURAQ00577 322 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 ZNF267Q14586 743 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 STXBP2Q15833 593 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ASIC2Q16515 512 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 FAM110CQ1W6H9 321 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 SOWAHAQ2M3V2 549 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 GALNTL6Q49A17 601 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MANEALQ5VSG8 457 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 SLC9A4Q6AI14 798 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 JADE1Q6IE81 842 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 KDM7AQ6ZMT4 941 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MICALCLQ6ZW33 695 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MRPL10Q7Z7H8 261 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 ZNF677Q86XU0 584 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ZC3H7AQ8IWR0 971 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 PLD5Q8N7P1 536 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 NAT8LQ8N9F0 302 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ERMNQ8TAM6 284 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ZNF606Q8WXB4 792 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 RAPGEF5Q92565 580 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 RPGRIP1Q96KN7 1286 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MAP7D2Q96T17 732 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ELF4Q99607 663 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 DCLK3Q9C098 648 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MTMR12Q9C0I1 747 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 SENP6Q9GZR1 1112 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 DNAI2Q9GZS0 605 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 TMX4Q9H1E5 349 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 DPEP3Q9H4B8 488 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MROH8Q9H579 483 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 FAM124BQ9H5Z6 455 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 SMYD3Q9H7B4 428 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 OXSMQ9NWU1 459 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 GDAP2Q9NXN4 497 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 TMOD4Q9NZQ9 345 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 FNIP2Q9P278 1114 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 RNF14Q9UBS8 474 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 LGALS13Q9UHV8 139 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CNOT11Q9UKZ1 510 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 TMEM131Q92545 1883 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 hCG_1818297A0A087WSY0 165 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 C2CD4BA6NLJ0 364 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ZNF487B1APH4 448 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ZNF561-AS1K7EIQ3 104 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PDHXO00330 501 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 KRT86O43790 486 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 TYROBPO43914 113 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ZBED4O75132 1171 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 TOM1L1O75674 476 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 GGPS1O95749 300 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CEACAM5P06731 702 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CLEC2LP0C7M8 214 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 DHRS4L1P0CG22 281 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ZNF286BP0CG31 522 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 TCP1P17987 556 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 IBSPP21815 317 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 RPL10P27635 214 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 RAP1GAPP47736 663 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 SCAND1P57086 179 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 KLHL30Q0D2K2 578 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 KCNJ11Q14654 390 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 FASTKD3Q14CZ7 662 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 DNTTIP2Q5QJE6 756 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 RNASEH2BQ5TBB1 312 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 MPZL3Q6UWV2 235 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MTERF4Q7Z6M4 381 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 PIGWQ7Z7B1 504 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 TMEM110Q86TL2 294 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 SLC13A5Q86YT5 568 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 LRRC71Q8N4P6 559 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MCPH1Q8NEM0 835 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 GOLGA5Q8TBA6 731 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 FNIP1Q8TF40 1166 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CLEC4CQ8WTT0 213 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PMM1Q92871 262 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ATP2A3Q93084 1043 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 OXNAD1Q96HP4 312 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 PBKQ96KB5 322 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MMP19Q99542 508 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 FAM213AQ9BRX8 229 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 DDX47Q9H0S4 455 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 SMOC1Q9H4F8 434 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CSNK1G1Q9HCP0 422 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 WDR6Q9NNW5 1121 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 SMYD2Q9NRG4 433 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 IL37Q9NZH6 218 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MARCH2Q9P0N8 246 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 IP6K2Q9UHH9 426 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 AMACRQ9UHK6 382 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PNMA2Q9UL42 364 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MFHAS1Q9Y4C4 1052 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CPAMD8Q8IZJ3 1885 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 NRCAMQ92823 1304 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PIKFYVEQ9Y2I7 2098 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 F8VP50 259 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 F8W810 466 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms