RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ZNF840PA6NDX5 716 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 COCHO43405 550 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 BZW1Q7L1Q6 419 aaKnown RBP16.93■□□□□ 0.3
USP4-201ENST00000265560 BEND5Q7L4P6 421 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 DENND1CQ8IV53 801 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 ARHGAP12Q8IWW6 846 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 ARHGAP18Q8N392 663 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 RPRD1AQ96P16 312 aaPredicted RBP16.93■□□□□ 0.3
USP4-201ENST00000265560 MLXIPLQ9NP71 852 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 CLIC5Q9NZA1 410 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 IL1RAPL1Q9NZN1 696 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 PLXNA3P51805 1871 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 TTC24A2A3L6 582 aaPredicted RBP16.92■□□□□ 0.3
USP4-201ENST00000265560 HIDE1A8MVS5 230 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 NRG2O14511 850 aaPredicted RBP16.92■□□□□ 0.3
USP4-201ENST00000265560 ARHGEF15O94989 841 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 CAPN2P17655 700 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 HCAR3P49019 387 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 HOOK3Q86VS8 718 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 UNC5BQ8IZJ1 945 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 FBF1Q8TES7 1133 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 SELENOSQ9BQE4 189 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 CCDC78A2IDD5 438 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 HMGB1P1B2RPK0 211 aaPredicted RBP16.92■□□□□ 0.3
USP4-201ENST00000265560 TLL1O43897 1013 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 CXCL14O95715 111 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 LINC00271P0C7V0 271 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 TMED2Q15363 201 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 NADSYN1Q6IA69 706 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 FAM109BQ6ICB4 259 aaPredicted RBP16.92■□□□□ 0.3
USP4-201ENST00000265560 MSANTD2Q6P1R3 559 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 CASC4Q6P4E1 433 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 CES3Q6UWW8 571 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 ZNF534Q76KX8 674 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 CHSY1Q86X52 802 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 UBE2OQ9C0C9 1292 aaKnown RBP16.92■□□□□ 0.3
USP4-201ENST00000265560 ZNF334Q9HCZ1 680 aaPredicted RBP16.92■□□□□ 0.3
USP4-201ENST00000265560 CHADO15335 359 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 CD68P34810 354 aaPredicted RBP16.92■□□□□ 0.3
USP4-201ENST00000265560 ATP5C1P36542 298 aaKnown RBP16.92■□□□□ 0.3
USP4-201ENST00000265560 PDZD4Q76G19 769 aaPredicted RBP16.92■□□□□ 0.3
USP4-201ENST00000265560 SPATA22Q8NHS9 363 aa16.92■□□□□ 0.3
USP4-201ENST00000265560 KIAA1671Q9BY89 1806 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 DOCK4Q8N1I0 1966 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 TGM5O43548 720 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 F7P08709 466 aaPredicted RBP16.91■□□□□ 0.3
USP4-201ENST00000265560 SMARCB1Q12824 385 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 TRIP4Q15650 581 aaPredicted RBP16.91■□□□□ 0.3
USP4-201ENST00000265560 PLPP4Q5VZY2 271 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 TXNDC8Q6A555 127 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 UBE2Q1Q7Z7E8 422 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 MICAL1Q8TDZ2 1067 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 KIF9Q9HAQ2 790 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 HACD1B0YJ81 288 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 TSPAN3O60637 253 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 NFKB1P19838 968 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 DNAJB1P25685 340 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 GCAP28676 217 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 PAPOLAP51003 745 aaKnown RBP16.91■□□□□ 0.3
USP4-201ENST00000265560 PPIDQ08752 370 aaKnown RBP16.91■□□□□ 0.3
USP4-201ENST00000265560 GALNT2Q10471 571 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 SF3A3Q12874 501 aaKnown RBP eCLIP16.91■□□□□ 0.36e-7■■■■■ 26.8
USP4-201ENST00000265560 SPDYCQ5MJ68 293 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 MANEALQ5VSG8 457 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 PRPF39Q86UA1 669 aaKnown RBP16.91■□□□□ 0.3
USP4-201ENST00000265560 CNTD1Q8N815 330 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 C2orf15Q8WU43 125 aaKnown RBP16.91■□□□□ 0.3
USP4-201ENST00000265560 KLHL5Q96PQ7 755 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 C17orf80Q9BSJ5 609 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 NOL6Q9H6R4 1146 aaKnown RBP16.91■□□□□ 0.3
USP4-201ENST00000265560 CERS4Q9HA82 394 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 ACTL7AQ9Y615 435 aa16.91■□□□□ 0.3
USP4-201ENST00000265560 KLKB1P03952 638 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 ZDHHC11BP0C7U3 371 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 SERPINB6P35237 376 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 RAB33AQ14088 237 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 C6orf118Q5T5N4 469 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 HS6ST3Q8IZP7 471 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 ATPAF2Q8N5M1 289 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 MGARPQ8TDB4 240 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 SLC22A17Q8WUG5 538 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 TCF25Q9BQ70 676 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 INSL5Q9Y5Q6 135 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 SLC4A7Q9Y6M7 1214 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.9■□□□□ 0.3
USP4-201ENST00000265560 J3KR12 359 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 STK10O94804 968 aaKnown RBP16.9■□□□□ 0.3
USP4-201ENST00000265560 BAIAP3O94812 1187 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 MT-CYBP00156 380 aaPredicted RBP16.9■□□□□ 0.3
USP4-201ENST00000265560 TPH1P17752 444 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 SLC6A4P31645 630 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 RPS24P62847 133 aaKnown RBP16.9■□□□□ 0.3
USP4-201ENST00000265560 GNGT1P63211 74 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 GABPB1Q06547 395 aaPredicted RBP16.9■□□□□ 0.3
USP4-201ENST00000265560 HECTD3Q5T447 861 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 BTN2A3PQ96KV6 586 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 GORASP1Q9BQQ3 440 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 HERC2P3Q9BVR0 1158 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 TRPM5Q9NZQ8 1165 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 RSPH14Q9UHP6 348 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms