RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 MRPS21P82921 87 aaKnown RBP10.2□□□□□ -0.78
CLN3-261ENST00000637686 ATP11AP98196 1134 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 PPP2R5DQ14738 602 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 ACAP1Q15027 740 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 CCDC14Q49A88 953 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 MS4A13Q5J8X5 152 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 PPP1R15BQ5SWA1 713 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 C11orf63Q6NUN7 778 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 NUDT18Q6ZVK8 323 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 SLFN11Q7Z7L1 901 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 CHSY1Q86X52 802 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 LGI2Q8N0V4 545 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 CFAP52Q8N1V2 620 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 CCDC33Q8N5R6 958 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 TXNDC5Q8NBS9 432 aaKnown RBP10.2□□□□□ -0.78
CLN3-261ENST00000637686 CCDC26Q8TAB7 109 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 RXFP2Q8WXD0 754 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 NT5C3BQ969T7 300 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 PGAP3Q96FM1 320 aaPredicted RBP10.2□□□□□ -0.78
CLN3-261ENST00000637686 PRICKLE1Q96MT3 831 aaPredicted RBP10.2□□□□□ -0.78
CLN3-261ENST00000637686 NCAPGQ9BPX3 1015 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 THAP2Q9H0W7 228 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 WDCPQ9H6R7 721 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 ZDHHC4Q9NPG8 344 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 STIM2Q9P246 746 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 HCN2Q9UL51 889 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 SLC27A6Q9Y2P4 619 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 C2CD4BA6NLJ0 364 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 F5H5T6 163 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 K7ESF4 209 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 PAGE1O75459 146 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 PAPSS2O95340 614 aaPredicted RBP10.19□□□□□ -0.78
CLN3-261ENST00000637686 KLF8O95600 359 aaPredicted RBP10.19□□□□□ -0.78
CLN3-261ENST00000637686 F9P00740 461 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 TACR2P21452 398 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 MAN1A1P33908 653 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 RDXP35241 583 aaKnown RBP10.19□□□□□ -0.78
CLN3-261ENST00000637686 RFC1P35251 1148 aaPredicted RBP10.19□□□□□ -0.78
CLN3-261ENST00000637686 CXCR3P49682 368 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 MAMLD1Q13495 774 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 CDO1Q16878 200 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 GEN1Q17RS7 908 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 C15orf59Q2T9L4 293 aaPredicted RBP10.19□□□□□ -0.78
CLN3-261ENST00000637686 RAB6CQ53S08 254 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 BRMS1LQ5PSV4 323 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 MPP7Q5T2T1 576 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 SH3PXD2AQ5TCZ1 1133 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 HEATR6Q6AI08 1181 aaKnown RBP10.19□□□□□ -0.78
CLN3-261ENST00000637686 DNAJC24Q6P3W2 148 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 SND1Q7KZF4 910 aaKnown RBP eCLIP10.19□□□□□ -0.78
CLN3-261ENST00000637686 SYT13Q7L8C5 426 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 BNIPLQ7Z465 357 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 CARNMT1Q8N4J0 409 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 ALLCQ8N6M5 410 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 NIPA2Q8N8Q9 360 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 IL17RCQ8NAC3 791 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 HJURPQ8NCD3 748 aaPredicted RBP10.19□□□□□ -0.78
CLN3-261ENST00000637686 TPCN2Q8NHX9 752 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 SLC35G2Q8TBE7 412 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 ZNF564Q8TBZ8 553 aaPredicted RBP10.19□□□□□ -0.78
CLN3-261ENST00000637686 PHOX2BQ99453 314 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 PRMT1Q99873 361 aaKnown RBP10.19□□□□□ -0.78
CLN3-261ENST00000637686 SLC2A11Q9BYW1 496 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 IRX2Q9BZI1 471 aaPredicted RBP10.19□□□□□ -0.78
CLN3-261ENST00000637686 TKTL2Q9H0I9 626 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 SIK2Q9H0K1 926 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 RAB6CQ9H0N0 254 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 LZTFL1Q9NQ48 299 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 ANLNQ9NQW6 1124 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 ARHGEF38Q9NXL2 777 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 CTTNBP2NLQ9P2B4 639 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 SLC8A2Q9UPR5 921 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 STARD13Q9Y3M8 1113 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 R4GN57 208 aa10.19□□□□□ -0.78
CLN3-261ENST00000637686 TYW5A2RUC4 315 aaKnown RBP10.18□□□□□ -0.78
CLN3-261ENST00000637686 I6L893 689 aaPredicted RBP10.18□□□□□ -0.78
CLN3-261ENST00000637686 SGK1O00141 431 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 ENDOD1O94919 500 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 GPD1P21695 349 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 HLA-FP30511 346 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 SDC4P31431 198 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 GGCXP38435 758 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 WASP42768 502 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 SLC1A1P43005 524 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 PXNP49023 591 aaPredicted RBP10.18□□□□□ -0.78
CLN3-261ENST00000637686 NRLP54845 237 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 RPL7AP62424 266 aaKnown RBP10.18□□□□□ -0.78
CLN3-261ENST00000637686 DMWDQ09019 674 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 MTA1Q13330 715 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 AUHQ13825 339 aaKnown RBP10.18□□□□□ -0.78
CLN3-261ENST00000637686 DMC1Q14565 340 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 ZNF528Q3MIS6 628 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 EGFLAMQ63HQ2 1017 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 FBXL22Q6P050 247 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 ANKS1BQ7Z6G8 1248 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 C14orf80Q86SX3 495 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 FAM131BQ86XD5 332 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 MFN1Q8IWA4 741 aa10.18□□□□□ -0.78
CLN3-261ENST00000637686 ZNF513Q8N8E2 541 aaPredicted RBP10.18□□□□□ -0.78
CLN3-261ENST00000637686 LRRC57Q8N9N7 239 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms