RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 APBB2Q92870 758 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 THAP11Q96EK4 314 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 MOCOSQ96EN8 888 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 DCUN1D1Q96GG9 259 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 OMDQ99983 421 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 LHX5Q9H2C1 402 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 TLE6Q9H808 572 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 GALNT8Q9NY28 637 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 MYO18AQ92614 2054 aaKnown RBP12.9□□□□□ -0.34
LIG1-221ENST00000613670 CCDC130P13994 396 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 PGAM1P18669 254 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 ME2P23368 584 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 MPSTP25325 297 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 ETV4P43268 484 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 RPL5P46777 297 aaKnown RBP12.9□□□□□ -0.34
LIG1-221ENST00000613670 STILQ15468 1287 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 FRMD7Q6ZUT3 714 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 PYROXD2Q8N2H3 581 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 NIPA2Q8N8Q9 360 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 NDRG1Q92597 394 aaKnown RBP12.9□□□□□ -0.34
LIG1-221ENST00000613670 CERS2Q96G23 380 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 TBCBQ99426 244 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 APBA2Q99767 749 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 FSD1LQ9BXM9 530 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 SMARCAD1Q9H4L7 1026 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 PRDM12Q9H4Q4 367 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 CYP3A43Q9HB55 503 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 MYOCOSA0A1B0GUC4 107 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 KLRG2A4D1S0 409 aaPredicted RBP12.9□□□□□ -0.34
LIG1-221ENST00000613670 TNFAIP8O95379 198 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 JCHAINP01591 159 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 AMHP03971 560 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 RGS2P41220 211 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 GMPSP49915 693 aaPredicted RBP12.9□□□□□ -0.34
LIG1-221ENST00000613670 FSTL1Q12841 308 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 HSDL1Q3SXM5 330 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 PMF1Q6P1K2 205 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 METTL7BQ6UX53 244 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 ARMCX2Q7L311 632 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 PHC3Q8NDX5 983 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 PHF12Q96QT6 1004 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 TMEM79Q9BSE2 394 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 NAT9Q9BTE0 207 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 WDR41Q9HAD4 459 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 COPG2Q9UBF2 871 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 ZNF180Q9UJW8 692 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 CPSF3Q9UKF6 684 aaKnown RBP12.9□□□□□ -0.34
LIG1-221ENST00000613670 A0A0A0MRY4 1105 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 E7ESA3 106 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 MAFO75444 373 aaPredicted RBP12.89□□□□□ -0.35
LIG1-221ENST00000613670 GMNNO75496 209 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 USP46P62068 366 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 PHEXP78562 749 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 AGKQ53H12 422 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 B3GNT6Q6ZMB0 384 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 TMC7Q7Z402 723 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 DEFB106AQ8N104 65 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 CYGBQ8WWM9 190 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 SPATA13Q96N96 652 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 PGLYRP2Q96PD5 576 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 CCDC167Q9P0B6 97 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 HES2Q9Y543 173 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 GNL1P36915 607 aaPredicted RBP12.89□□□□□ -0.35
LIG1-221ENST00000613670 PCSK7Q16549 785 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 KIZQ2M2Z5 673 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 CAND1Q86VP6 1230 aaKnown RBP12.89□□□□□ -0.35
LIG1-221ENST00000613670 FAM136AQ96C01 138 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 CELF6Q96J87 481 aaKnown RBP12.89□□□□□ -0.35
LIG1-221ENST00000613670 LPIN3Q9BQK8 851 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 SAC3D1A6NKF1 404 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 C2CD4BA6NLJ0 364 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 C19orf81C9J6K1 198 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 STRNO43815 780 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 PIK3R1P27986 724 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 MRPS5P82675 430 aaKnown RBP12.89□□□□□ -0.35
LIG1-221ENST00000613670 OLIG2Q13516 323 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 ARL13BQ3SXY8 428 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 AMIGO2Q86SJ2 522 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 NUP93Q8N1F7 819 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 ARFGAP1Q8N6T3 406 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 CYLDQ9NQC7 956 aa12.89□□□□□ -0.35
LIG1-221ENST00000613670 DLEC1Q9Y238 1755 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 SMIM31A0A1B0GVY4 71 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 C3orf70A6NLC5 250 aaPredicted RBP12.88□□□□□ -0.35
LIG1-221ENST00000613670 GPR25O00155 361 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 PMPCBO75439 489 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 MOCS2O96007 188 aaPredicted RBP12.88□□□□□ -0.35
LIG1-221ENST00000613670 POU6F1Q14863 301 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 GJC2Q5T442 439 aaPredicted RBP12.88□□□□□ -0.35
LIG1-221ENST00000613670 LPCAT2Q7L5N7 544 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 MYLK4Q86YV6 388 aaPredicted RBP12.88□□□□□ -0.35
LIG1-221ENST00000613670 TTC39CQ8N584 583 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 DGCR14Q96DF8 476 aaKnown RBP12.88□□□□□ -0.35
LIG1-221ENST00000613670 NPAS2Q99743 824 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 MAGEB5Q9BZ81 275 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 ATXN3LQ9H3M9 355 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 ITGA11Q9UKX5 1188 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 PSAT1Q9Y617 370 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 NFASCO94856 1347 aa12.88□□□□□ -0.35
LIG1-221ENST00000613670 HBP1O60381 514 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms