RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 MED7O43513 233 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 IGLV3-19P01714 112 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 PABPC1P11940 636 aaKnown RBP12.97□□□□□ -0.33
UPF1-203ENST00000594504 GNA15P30679 374 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 CSNK1EP49674 416 aaKnown RBP12.97□□□□□ -0.33
UPF1-203ENST00000594504 SLC14A1Q13336 389 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 CAMK2GQ13555 558 aaPredicted RBP12.97□□□□□ -0.33
UPF1-203ENST00000594504 RAPGEF1Q13905 1077 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 DRAP1Q14919 205 aaPredicted RBP12.97□□□□□ -0.33
UPF1-203ENST00000594504 SYCP1Q15431 976 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 FILIP1LQ4L180 1135 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 PIK3R6Q5UE93 754 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 MBLAC2Q68D91 279 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 RAB44Q7Z6P3 723 aaPredicted RBP12.97□□□□□ -0.33
UPF1-203ENST00000594504 C1orf216Q8TAB5 229 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 SETD7Q8WTS6 366 aaKnown RBP12.97□□□□□ -0.33
UPF1-203ENST00000594504 NAA15Q9BXJ9 866 aaKnown RBP12.97□□□□□ -0.33
UPF1-203ENST00000594504 MIS12Q9H081 205 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 GANQ9H2C0 597 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 LHX5Q9H2C1 402 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 CNGB3Q9NQW8 809 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 ACACBO00763 2458 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 PLXNB3Q9ULL4 1909 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 TMEM131Q92545 1883 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 M0QYV0 167 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 FOXN3O00409 490 aaPredicted RBP12.96□□□□□ -0.33
UPF1-203ENST00000594504 THAP12O43422 761 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 ACSL4O60488 711 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 FYNP06241 537 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 FTH1P19P0C7X4 201 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 RDXP35241 583 aaKnown RBP12.96□□□□□ -0.33
UPF1-203ENST00000594504 KLK7P49862 253 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 TBX4P57082 545 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 BPIFB4P59827 614 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 RPS14P62263 151 aaKnown RBP12.96□□□□□ -0.33
UPF1-203ENST00000594504 PTK2Q05397 1052 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 NUMA1Q14980 2115 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 HLA-BQ31612 363 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 FAM133BQ5BKY9 247 aaKnown RBP12.96□□□□□ -0.33
UPF1-203ENST00000594504 NADSYN1Q6IA69 706 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 MSANTD2Q6P1R3 559 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 LRSAM1Q6UWE0 723 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 LAYNQ6UX15 382 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 FAM71AQ8IYT1 594 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 SCML4Q8N228 414 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 WFIKKN2Q8TEU8 576 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 ZNF606Q8WXB4 792 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 PCMTD1Q96MG8 357 aaPredicted RBP12.96□□□□□ -0.33
UPF1-203ENST00000594504 STK33Q9BYT3 514 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 TSPY26PQ9H489 355 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 RTN4Q9NQC3 1192 aaKnown RBP12.96□□□□□ -0.33
UPF1-203ENST00000594504 TM7SF3Q9NS93 570 aa12.96□□□□□ -0.33
UPF1-203ENST00000594504 FAM207AQ9NSI2 230 aaPredicted RBP12.96□□□□□ -0.33
UPF1-203ENST00000594504 FNDC3AQ9Y2H6 1198 aaKnown RBP12.96□□□□□ -0.33
UPF1-203ENST00000594504 MUC22E2RYF6 1773 aaPredicted RBP12.96□□□□□ -0.34
UPF1-203ENST00000594504 FAM221BA6H8Z2 402 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 TMEM8BA6NDV4 472 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 F8VZ95 297 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 H0Y626 953 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 CBFA2T3O75081 653 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 TRIM16O95361 564 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 SERPINC1P01008 464 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 IGLV3-27P01718 113 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 LTFP02788 710 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 HOXB3P14651 431 aaPredicted RBP12.95□□□□□ -0.34
UPF1-203ENST00000594504 POLR2EP19388 210 aaKnown RBP12.95□□□□□ -0.34
UPF1-203ENST00000594504 MATKP42679 507 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 NUMBP49757 651 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 POLR2FP61218 127 aaKnown RBP12.95□□□□□ -0.34
UPF1-203ENST00000594504 HNRNPDQ14103 355 aaKnown RBP12.95□□□□□ -0.34
UPF1-203ENST00000594504 ZNF423Q2M1K9 1284 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 SCUBE3Q8IX30 993 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 AHI1Q8N157 1196 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 CFAP52Q8N1V2 620 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.95□□□□□ -0.34
UPF1-203ENST00000594504 NEK11Q8NG66 645 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 ADAM32Q8TC27 787 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 LMLNQ96KR4 655 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 PRICKLE1Q96MT3 831 aaPredicted RBP12.95□□□□□ -0.34
UPF1-203ENST00000594504 ZDHHC5Q9C0B5 715 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 ACP6Q9NPH0 428 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 PCOLCE2Q9UKZ9 415 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 INTS6Q9UL03 887 aaKnown RBP12.95□□□□□ -0.34
UPF1-203ENST00000594504 NAALADL1Q9UQQ1 740 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 SNX11Q9Y5W9 270 aa12.95□□□□□ -0.34
UPF1-203ENST00000594504 A0A1B0GTH6 734 aa12.94□□□□□ -0.34
UPF1-203ENST00000594504 GOLGA8CPA6NN73 597 aa12.94□□□□□ -0.34
UPF1-203ENST00000594504 EPHB6O15197 1021 aa12.94□□□□□ -0.34
UPF1-203ENST00000594504 FSBPO95073 299 aa12.94□□□□□ -0.34
UPF1-203ENST00000594504 LATS1O95835 1130 aa12.94□□□□□ -0.34
UPF1-203ENST00000594504 CAPNS1P04632 268 aa12.94□□□□□ -0.34
UPF1-203ENST00000594504 DLDP09622 509 aaKnown RBP12.94□□□□□ -0.34
UPF1-203ENST00000594504 PNMA6AP0CW24 399 aaPredicted RBP12.94□□□□□ -0.34
UPF1-203ENST00000594504 CLCN1P35523 988 aa12.94□□□□□ -0.34
UPF1-203ENST00000594504 CTSOP43234 321 aaPredicted RBP12.94□□□□□ -0.34
UPF1-203ENST00000594504 GPD2P43304 727 aa12.94□□□□□ -0.34
UPF1-203ENST00000594504 SLC11A2P49281 568 aa12.94□□□□□ -0.34
UPF1-203ENST00000594504 RPS24P62847 133 aaKnown RBP12.94□□□□□ -0.34
UPF1-203ENST00000594504 E2F5Q15329 346 aa12.94□□□□□ -0.34
UPF1-203ENST00000594504 KIF19Q2TAC6 998 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms