RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ALLCQ8N6M5 410 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 NETO2Q8NC67 525 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 ADAMTS19Q8TE59 1207 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 RUBCNQ92622 972 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 RAB17Q9H0T7 212 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 MPP6Q9NZW5 540 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 PPARGC1AQ9UBK2 798 aaKnown RBP31.49■■■□□ 2.63
CTCF-203ENST00000566078 AGO1Q9UL18 857 aaKnown RBP31.49■■■□□ 2.63
CTCF-203ENST00000566078 UTP11Q9Y3A2 253 aaKnown RBP31.49■■■□□ 2.63
CTCF-203ENST00000566078 F5H5T6 163 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 ZNF197O14709 1029 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 GLP2RO95838 553 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 SERPINB6P35237 376 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 RARS2Q5T160 578 aaKnown RBP31.49■■■□□ 2.63
CTCF-203ENST00000566078 DARS2Q6PI48 645 aaKnown RBP31.49■■■□□ 2.63
CTCF-203ENST00000566078 B4GALNT4Q76KP1 1039 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 BZW1Q7L1Q6 419 aaKnown RBP31.49■■■□□ 2.63
CTCF-203ENST00000566078 NPWQ8N729 165 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 EFHBQ8N7U6 833 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 ZYG11BQ9C0D3 744 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 TASP1Q9H6P5 420 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 EPB41L5Q9HCM4 733 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 A0A1W2PPC1 479 aa31.48■■■□□ 2.63
CTCF-203ENST00000566078 ESYT3A0FGR9 886 aa31.48■■■□□ 2.63
CTCF-203ENST00000566078 LINC01565O15544 149 aa31.48■■■□□ 2.63
CTCF-203ENST00000566078 SLC6A4P31645 630 aa31.48■■■□□ 2.63
CTCF-203ENST00000566078 IRAK1P51617 712 aa31.48■■■□□ 2.63
CTCF-203ENST00000566078 MLLT1Q03111 559 aaPredicted RBP31.48■■■□□ 2.63
CTCF-203ENST00000566078 LGI2Q8N0V4 545 aa31.48■■■□□ 2.63
CTCF-203ENST00000566078 TTC16Q8NEE8 873 aa31.48■■■□□ 2.63
CTCF-203ENST00000566078 IGSF8Q969P0 613 aa31.48■■■□□ 2.63
CTCF-203ENST00000566078 RPRD1AQ96P16 312 aaPredicted RBP31.48■■■□□ 2.63
CTCF-203ENST00000566078 OLFM3Q96PB7 478 aa31.48■■■□□ 2.63
CTCF-203ENST00000566078 PRDM12Q9H4Q4 367 aa31.48■■■□□ 2.63
CTCF-203ENST00000566078 PRRC2BQ5JSZ5 2229 aaKnown RBP31.48■■■□□ 2.63
CTCF-203ENST00000566078 IGLV3-10A0A075B6K4 115 aa31.47■■■□□ 2.63
CTCF-203ENST00000566078 SGK1O00141 431 aa31.47■■■□□ 2.63
CTCF-203ENST00000566078 CEBPBP17676 345 aa31.47■■■□□ 2.63
CTCF-203ENST00000566078 VSNL1P62760 191 aa31.47■■■□□ 2.63
CTCF-203ENST00000566078 XRCC4Q13426 336 aa31.47■■■□□ 2.63
CTCF-203ENST00000566078 PTK6Q13882 451 aa31.47■■■□□ 2.63
CTCF-203ENST00000566078 SYDE1Q6ZW31 735 aaPredicted RBP31.47■■■□□ 2.63
CTCF-203ENST00000566078 CDKL3Q8IVW4 592 aaPredicted RBP31.47■■■□□ 2.63
CTCF-203ENST00000566078 ERP44Q9BS26 406 aa31.47■■■□□ 2.63
CTCF-203ENST00000566078 TRIM31Q9BZY9 425 aa31.47■■■□□ 2.63
CTCF-203ENST00000566078 SMG9Q9H0W8 520 aaKnown RBP31.47■■■□□ 2.63
CTCF-203ENST00000566078 LSM7Q9UK45 103 aaKnown RBP31.47■■■□□ 2.63
CTCF-203ENST00000566078 MRPS23Q9Y3D9 190 aaKnown RBP31.47■■■□□ 2.63
CTCF-203ENST00000566078 AVPR1AP37288 418 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 WDR93Q6P2C0 686 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 RFWD3Q6PCD5 774 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 IFT20Q8IY31 132 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 CMTM8Q8IZV2 173 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 RTL3Q8N8U3 475 aaKnown RBP31.46■■■□□ 2.63
CTCF-203ENST00000566078 LRRN4Q8WUT4 740 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 RSAD2Q8WXG1 361 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 ING5Q8WYH8 240 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 MYEOVQ96EZ4 313 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 QKIQ96PU8 341 aaKnown RBP eCLIP31.46■■■□□ 2.63
CTCF-203ENST00000566078 CFAP97Q9P2B7 532 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 RAB21Q9UL25 225 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 ARHGAP26Q9UNA1 814 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 TRIOBPQ9H2D6 2365 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 SCAMP3O14828 347 aaKnown RBP31.46■■■□□ 2.63
CTCF-203ENST00000566078 LATS1O95835 1130 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 TMEM184AQ6ZMB5 413 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 CASKIN2Q8WXE0 1202 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 APOL5Q9BWW9 433 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 DPH5Q9H2P9 285 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 GDF3Q9NR23 364 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 COLQQ9Y215 455 aaPredicted RBP31.46■■■□□ 2.63
CTCF-203ENST00000566078 SH3BP1Q9Y3L3 701 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 RAD54BQ9Y620 910 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 CHD5Q8TDI0 1954 aa31.46■■■□□ 2.63
CTCF-203ENST00000566078 DRGXA6NNA5 263 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 SOBPA7XYQ1 873 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 WASH4PA8MWX3 477 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 DYNC1I1O14576 645 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 GREM1O60565 184 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 CNTN5O94779 1100 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 KRT14P02533 472 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 RHOQP17081 205 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 TRIP13Q15645 432 aaPredicted RBP31.45■■■□□ 2.62
CTCF-203ENST00000566078 ALFQ53S48 1182 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 SLC45A4Q5BKX6 768 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 NLRP14Q86W24 1093 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 TP53INP2Q8IXH6 220 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 DDX50Q9BQ39 737 aaKnown RBP31.45■■■□□ 2.62
CTCF-203ENST00000566078 ASIC3Q9UHC3 531 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 NEU2Q9Y3R4 380 aa31.45■■■□□ 2.62
CTCF-203ENST00000566078 BHMG1C9JSJ3 638 aaPredicted RBP31.44■■■□□ 2.62
CTCF-203ENST00000566078 LEFTY2O00292 366 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 MCM3P25205 808 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 GDF10P55107 478 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 PDK1Q15118 436 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 ADGRF1Q5T601 910 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 DUPD1Q68J44 220 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 Q6ZNB5 142 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 TFAP2DQ7Z6R9 452 aa31.44■■■□□ 2.62
CTCF-203ENST00000566078 PRUNE1Q86TP1 453 aa31.44■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms