RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NAT16Q8N8M0 369 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 KDF1Q8NAX2 398 aaPredicted RBP17.87■□□□□ 0.45
CLN3-217ENST00000565354 DDI1Q8WTU0 396 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 CHFRQ96EP1 664 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 SLC39A13Q96H72 371 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 BTN2A3PQ96KV6 586 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 P2RY13Q9BPV8 354 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 ISCUQ9H1K1 167 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 WDCPQ9H6R7 721 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 SCINQ9Y6U3 715 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 DSPP15924 2871 aaKnown RBP17.87■□□□□ 0.45
CLN3-217ENST00000565354 GOLGA6L3A6NEY3 463 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.86■□□□□ 0.45
CLN3-217ENST00000565354 GIPC1O14908 333 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 HOXC11O43248 304 aaPredicted RBP17.86■□□□□ 0.45
CLN3-217ENST00000565354 TSPAN3O60637 253 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 RNF40O75150 1001 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 TYRP14679 529 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 CDC25BP30305 580 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 RDXP35241 583 aaKnown RBP17.86■□□□□ 0.45
CLN3-217ENST00000565354 GFPT1Q06210 699 aaPredicted RBP17.86■□□□□ 0.45
CLN3-217ENST00000565354 ELF2Q15723 593 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 PREPLQ4J6C6 727 aaPredicted RBP17.86■□□□□ 0.45
CLN3-217ENST00000565354 MPPE1Q53F39 396 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 ADGRF1Q5T601 910 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 CHSY1Q86X52 802 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 TC2NQ8N9U0 490 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 SPC24Q8NBT2 197 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 AZIN2Q96A70 460 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 HHIPQ96QV1 700 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 CHP1Q99653 195 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 NHEJ1Q9H9Q4 299 aaPredicted RBP17.86■□□□□ 0.45
CLN3-217ENST00000565354 MRPL47Q9HD33 250 aaKnown RBP17.86■□□□□ 0.45
CLN3-217ENST00000565354 POLR3BQ9NW08 1133 aaPredicted RBP17.86■□□□□ 0.45
CLN3-217ENST00000565354 WASF3Q9UPY6 502 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 KIAA1549LQ6ZVL6 1849 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 THADAQ6YHU6 1953 aa17.86■□□□□ 0.45
CLN3-217ENST00000565354 C2CD4BA6NLJ0 364 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 C4orf47A7E2U8 309 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 RHOBTB1O94844 696 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 EGFP01133 1207 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 TFE3P19532 575 aaPredicted RBP17.85■□□□□ 0.45
CLN3-217ENST00000565354 RFC1P35251 1148 aaPredicted RBP17.85■□□□□ 0.45
CLN3-217ENST00000565354 GALK1P51570 392 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 CREB5Q02930 508 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 ZNF252P-AS1Q0IIN9 211 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 SLC18A3Q16572 532 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 C15orf59Q2T9L4 293 aaPredicted RBP17.85■□□□□ 0.45
CLN3-217ENST00000565354 BRMS1LQ5PSV4 323 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 RAP1GAP2Q684P5 730 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 TRNP1Q6NT89 227 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 ASCC3Q8N3C0 2202 aaKnown RBP17.85■□□□□ 0.45
CLN3-217ENST00000565354 TMA16Q96EY4 203 aaKnown RBP17.85■□□□□ 0.45
CLN3-217ENST00000565354 PGAP3Q96FM1 320 aaPredicted RBP17.85■□□□□ 0.45
CLN3-217ENST00000565354 PIGVQ9NUD9 493 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 DNAJC17Q9NVM6 304 aaKnown RBP17.85■□□□□ 0.45
CLN3-217ENST00000565354 PLK2Q9NYY3 685 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 MARK1Q9P0L2 795 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 DEC1Q9P2X7 70 aa17.85■□□□□ 0.45
CLN3-217ENST00000565354 GOLGA6L7A0A1B0GV03 622 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 BCLAF3A2AJT9 711 aaKnown RBP17.84■□□□□ 0.45
CLN3-217ENST00000565354 KCNU1A8MYU2 1149 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 APODP05090 189 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 HOXB3P14651 431 aaPredicted RBP17.84■□□□□ 0.45
CLN3-217ENST00000565354 DRD1P21728 446 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 EIF2DP41214 584 aaKnown RBP17.84■□□□□ 0.45
CLN3-217ENST00000565354 PTPN9P43378 593 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 KDSRQ06136 332 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 FOXC1Q12948 553 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 MAMLD1Q13495 774 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 CCDC14Q49A88 953 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 DAB2IPQ5VWQ8 1189 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 GRAMD4Q6IC98 578 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 PLEKHA7Q6IQ23 1121 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 RFWD3Q6PCD5 774 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 NUDT18Q6ZVK8 323 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 CCDC117Q8IWD4 279 aaPredicted RBP17.84■□□□□ 0.45
CLN3-217ENST00000565354 FAM217AQ8IXS0 508 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 FAM172AQ8WUF8 416 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 NT5C3BQ969T7 300 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 PNKPQ96T60 521 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 TKTL2Q9H0I9 626 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 FBRSL1Q9HCM7 1045 aaKnown RBP17.84■□□□□ 0.45
CLN3-217ENST00000565354 ARHGEF4Q9NR80 690 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 IMPACTQ9P2X3 320 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 STOML2Q9UJZ1 356 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 DMXL2Q8TDJ6 3036 aa17.84■□□□□ 0.45
CLN3-217ENST00000565354 TCRBV5S1A1TA0A578 114 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 LNP1A1A4G5 178 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 TMEM8BA6NDV4 472 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 F5H5T6 163 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 DCLK1O15075 740 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 TACR2P21452 398 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 PSMA2P25787 234 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 OPRD1P41143 372 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 SLC6A11P48066 632 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 CXCR3P49682 368 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 RPL7AP62424 266 aaKnown RBP17.83■□□□□ 0.44
CLN3-217ENST00000565354 EIF4EBP2Q13542 120 aaPredicted RBP17.83■□□□□ 0.44
CLN3-217ENST00000565354 ARL13BQ3SXY8 428 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms