RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SCAPQ12770 1279 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 CCINQ13939 588 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 MESDQ14696 234 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 UBXN2BQ14CS0 331 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 SPA17Q15506 151 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 GEN1Q17RS7 908 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 MPPE1Q53F39 396 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 KCNT1Q5JUK3 1230 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 C10orf76Q5T2E6 689 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 EMC10Q5UCC4 262 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 Q6ZS52 159 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 SND1Q7KZF4 910 aaKnown RBP eCLIP10.11□□□□□ -0.79
CLK3-208ENST00000562626 TMEM105Q8N8V8 129 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 HJURPQ8NCD3 748 aaPredicted RBP10.11□□□□□ -0.79
CLK3-208ENST00000562626 FLCNQ8NFG4 579 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 PJA1Q8NG27 643 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 CD101Q93033 1021 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 TMA16Q96EY4 203 aaKnown RBP10.11□□□□□ -0.79
CLK3-208ENST00000562626 HAPLN3Q96S86 360 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 KCTD15Q96SI1 283 aaPredicted RBP10.11□□□□□ -0.79
CLK3-208ENST00000562626 P2RY13Q9BPV8 354 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 C8orf33Q9H7E9 229 aaPredicted RBP10.11□□□□□ -0.79
CLK3-208ENST00000562626 NDFIP2Q9NV92 336 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 DNAJC17Q9NVM6 304 aaKnown RBP10.11□□□□□ -0.79
CLK3-208ENST00000562626 DLGAP2Q9P1A6 1054 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 IP6K2Q9UHH9 426 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 USP18Q9UMW8 372 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 MFHAS1Q9Y4C4 1052 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 TNRC6BQ9UPQ9 1833 aaKnown RBP10.11□□□□□ -0.79
CLK3-208ENST00000562626 SPAG17Q6Q759 2223 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 NUMA1Q14980 2115 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 FAM170BA6NMN3 283 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 DRGXA6NNA5 263 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 GOLGA6L6A8MZA4 724 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 F5H5T6 163 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 ARHGAP6O43182 974 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 SRGAP2O75044 1071 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 LRIG2O94898 1065 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 LUC7L3O95232 432 aaKnown RBP10.1□□□□□ -0.79
CLK3-208ENST00000562626 CD48P09326 243 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 RARAP10276 462 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 GJC1P36383 396 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 MARCKSL1P49006 195 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 HADHBP55084 474 aaKnown RBP10.1□□□□□ -0.79
CLK3-208ENST00000562626 LMAN2Q12907 356 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 PIGHQ14442 188 aaPredicted RBP10.1□□□□□ -0.79
CLK3-208ENST00000562626 CXorf57Q6NSI4 855 aaKnown RBP10.1□□□□□ -0.79
CLK3-208ENST00000562626 ANKS1BQ7Z6G8 1248 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 SLFN11Q7Z7L1 901 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 CCAR2Q8N163 923 aaKnown RBP10.1□□□□□ -0.79
CLK3-208ENST00000562626 CARNMT1Q8N4J0 409 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 NETO2Q8NC67 525 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 TPCN2Q8NHX9 752 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 SORCS1Q8WY21 1168 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 RPRD1AQ96P16 312 aaPredicted RBP10.1□□□□□ -0.79
CLK3-208ENST00000562626 PNKPQ96T60 521 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 OSBPL2Q9H1P3 480 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 ZWILCHQ9H900 591 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 ARHGEF4Q9NR80 690 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 OR12D3Q9UGF7 316 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 INTS6Q9UL03 887 aaKnown RBP10.1□□□□□ -0.79
CLK3-208ENST00000562626 AP4E1Q9UPM8 1137 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 PAXBP1Q9Y5B6 917 aa10.1□□□□□ -0.79
CLK3-208ENST00000562626 THADAQ6YHU6 1953 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 A0A0A6YYK5 440 aaPredicted RBP10.09□□□□□ -0.79
CLK3-208ENST00000562626 GRID2IPA4D2P6 1211 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 MYO1FO00160 1098 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 RNF8O76064 485 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 KAT7O95251 611 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 MOCS3O95396 460 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 HNRNPLP14866 589 aaKnown RBP eCLIP10.09□□□□□ -0.79
CLK3-208ENST00000562626 AOC1P19801 751 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 COMTP21964 271 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 MZF1P28698 734 aaPredicted RBP10.09□□□□□ -0.79
CLK3-208ENST00000562626 L1CAMP32004 1257 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 PCK1P35558 622 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 DGKGP49619 791 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 ARSEP51690 589 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 SEC13P55735 322 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 NRG1Q02297 640 aaPredicted RBP10.09□□□□□ -0.79
CLK3-208ENST00000562626 NR1H3Q13133 447 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 MMRN1Q13201 1228 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 FUT11Q495W5 492 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 ERMARDQ5T6L9 678 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 GRAMD4Q6IC98 578 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 ZNF852Q6ZMS4 543 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 TFAP2DQ7Z6R9 452 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 KIAA0907Q7Z7F0 614 aaPredicted RBP10.09□□□□□ -0.79
CLK3-208ENST00000562626 KIAA1328Q86T90 577 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 ADIPOR2Q86V24 386 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 NLRP14Q86W24 1093 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 TP53INP2Q8IXH6 220 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 RHOT2Q8IXI1 618 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 APCDD1Q8J025 514 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 TERB1Q8NA31 727 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 CCDC112Q8NEF3 446 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 PBXIP1Q96AQ6 731 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 ALG14Q96F25 216 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 C1orf74Q96LT6 269 aa10.09□□□□□ -0.79
CLK3-208ENST00000562626 PPP1R9BQ96SB3 815 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms