RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CFAP45Q9UL16 551 aa10.52□□□□□ -0.73
SCFD1-220ENST00000556486 HECTD1Q9ULT8 2610 aa10.52□□□□□ -0.73
SCFD1-220ENST00000556486 MYLKQ15746 1914 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 F13A1P00488 732 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 HLA-EP13747 358 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 TYRP14679 529 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 ATF4P18848 351 aaPredicted RBP10.51□□□□□ -0.73
SCFD1-220ENST00000556486 ASPAP45381 313 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 ME1P48163 572 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 C4orf17Q53FE4 359 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 C1orf220Q5T0J3 134 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 ZNF438Q7Z4V0 828 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 ACOT1Q86TX2 421 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 CEP57L1Q8IYX8 460 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 GALNT15Q8N3T1 639 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 SLC2A14Q8TDB8 520 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 ELMO3Q96BJ8 720 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 P2RY11Q96G91 374 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 FAXDC2Q96IV6 333 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 HNRNPABQ99729 332 aaKnown RBP10.51□□□□□ -0.73
SCFD1-220ENST00000556486 KLF16Q9BXK1 252 aaPredicted RBP10.51□□□□□ -0.73
SCFD1-220ENST00000556486 ZDHHC5Q9C0B5 715 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 NACA2Q9H009 215 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 PRORYQ9H606 182 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 TLR8Q9NR97 1041 aaKnown RBP10.51□□□□□ -0.73
SCFD1-220ENST00000556486 ZDHHC3Q9NYG2 299 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 WSB2Q9NYS7 404 aaPredicted RBP10.51□□□□□ -0.73
SCFD1-220ENST00000556486 USP25Q9UHP3 1055 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 SCML2Q9UQR0 700 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 TRAF3IP3Q9Y228 551 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 SNX11Q9Y5W9 270 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 MYH10P35580 1976 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 MYO18BQ8IUG5 2567 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 NUMA1Q14980 2115 aa10.51□□□□□ -0.73
SCFD1-220ENST00000556486 HHLA1C9JL84 531 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 J3QL48 77 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 FLRT2O43155 660 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 BEST1O76090 585 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 TBX18O95935 607 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 NR3C1P04150 777 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 CMA1P23946 247 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 GPC1P35052 558 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 AFMP43652 599 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 DGKGP49619 791 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 TPMTP51580 245 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 NDST1P52848 882 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 DLG4P78352 724 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 KIF19Q2TAC6 998 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 KCNT1Q5JUK3 1230 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 PRAMEF14Q5SWL7 426 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 CLEC20AQ6ZU45 233 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 DNASE2BQ8WZ79 361 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 PAGE5Q96GU1 130 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 CDC6Q99741 560 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 MED10Q9BTT4 135 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 OSBPL2Q9H1P3 480 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 CYP3A43Q9HB55 503 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 EXOC1Q9NV70 894 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 WDR35Q9P2L0 1181 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 HMGXB4Q9UGU5 601 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 FBXO10Q9UK96 956 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 HPSEQ9Y251 543 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 PCDHA5Q9Y5H7 936 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 STON1Q9Y6Q2 735 aa10.5□□□□□ -0.73
SCFD1-220ENST00000556486 PLXNA2O75051 1894 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 KNL1Q8NG31 2342 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 FAM237AA0A1B0GTK4 181 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 J3QKU1 62 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 GFRA2O00451 464 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 MDM4O15151 490 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 FAM200BP0CF97 657 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 ZNF883P0CG24 379 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 CCDC130P13994 396 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 TRIM21P19474 475 aaKnown RBP10.49□□□□□ -0.73
SCFD1-220ENST00000556486 ATP5C1P36542 298 aaKnown RBP10.49□□□□□ -0.73
SCFD1-220ENST00000556486 IL12RB1P42701 662 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 ARSDP51689 593 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 KIF11P52732 1056 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 ZNF132P52740 706 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 CXADRP78310 365 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 GOLGA8FQ08AF8 430 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 GOLGA8DPQ0D2H9 430 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 CCDC173Q0VFZ6 552 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 DNAJC3Q13217 504 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 SMAD1Q15797 465 aaKnown RBP10.49□□□□□ -0.73
SCFD1-220ENST00000556486 PCSK4Q6UW60 755 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 NXPE4Q6UWF7 544 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 SCARA5Q6ZMJ2 495 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 LRRC69Q6ZNQ3 347 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 CCDC186Q7Z3E2 898 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 GATAD2AQ86YP4 633 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 GRAMD1CQ8IYS0 662 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 C12orf29Q8N999 325 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 XPO6Q96QU8 1125 aaKnown RBP10.49□□□□□ -0.73
SCFD1-220ENST00000556486 C6orf106Q9H6K1 298 aaPredicted RBP10.49□□□□□ -0.73
SCFD1-220ENST00000556486 ZFAND3Q9H8U3 227 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 NPHS2Q9NP85 383 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.49□□□□□ -0.73
SCFD1-220ENST00000556486 OSER1Q9NX31 292 aa10.49□□□□□ -0.73
SCFD1-220ENST00000556486 CLIC5Q9NZA1 410 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms