RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 ERCC6LQ2NKX8 1250 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 BRMS1LQ5PSV4 323 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 MANEALQ5VSG8 457 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 FBXL22Q6P050 247 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 C1orf228Q6PIY5 440 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 OR52K2Q8NGK3 314 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 FAF2Q96CS3 445 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 CDH7Q9ULB5 785 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 EEF2KO00418 725 aaKnown RBP11.11□□□□□ -0.63
TDP1-211ENST00000555178 FGF19O95750 216 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 APOEP02649 317 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 RHOXF2BP0C7M4 288 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 LAMP2P13473 410 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 COG7P83436 770 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 GBE1Q04446 702 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 NNTQ13423 1086 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 DPYSQ14117 519 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 NCBP2-AS2Q69YL0 99 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 VITQ6UXI7 678 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 RFX8Q6ZV50 586 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 BBS12Q6ZW61 710 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 MYRIPQ8NFW9 859 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 UBE2Q2Q8WVN8 375 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 HLA-CQ95604 372 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 RHOXF2Q9BQY4 288 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 PLK2Q9NYY3 685 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 AMACRQ9UHK6 382 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 ZSCAN5CA6NGD5 496 aaPredicted RBP11.1□□□□□ -0.63
TDP1-211ENST00000555178 C2CD4DB7Z1M9 353 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 E9PAM4 449 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 GFRA2O00451 464 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 MFSD11O43934 449 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 TJP3O95049 919 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 IL9P15248 144 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 TACR2P21452 398 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 ARL4AP40617 200 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 AIF1P55008 147 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 TPI1P60174 286 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 SLC7A5Q01650 507 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 OTUD4Q01804 1114 aaKnown RBP11.1□□□□□ -0.63
TDP1-211ENST00000555178 TNK2Q07912 1038 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 SLC10A2Q12908 348 aaPredicted RBP11.1□□□□□ -0.63
TDP1-211ENST00000555178 USP4Q13107 963 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 GRM2Q14416 872 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 NAIF1Q69YI7 327 aaPredicted RBP11.1□□□□□ -0.63
TDP1-211ENST00000555178 SLC9A4Q6AI14 798 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 RWDD4Q6NW29 188 aaKnown RBP11.1□□□□□ -0.63
TDP1-211ENST00000555178 HTR3DQ70Z44 454 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 TADA2BQ86TJ2 420 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 PRUNE1Q86TP1 453 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 PSTKQ8IV42 348 aaKnown RBP11.1□□□□□ -0.63
TDP1-211ENST00000555178 MAP7D3Q8IWC1 876 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 LGI2Q8N0V4 545 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 NPWQ8N729 165 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 TTC8Q8TAM2 541 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 ACTL9Q8TC94 416 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 WFDC5Q8TCV5 224 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.1□□□□□ -0.63
TDP1-211ENST00000555178 SMARCD2Q92925 531 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 PLD4Q96BZ4 506 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 BTN2A3PQ96KV6 586 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 RIPOR3Q96MK2 946 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 CDK5RAP1Q96SZ6 601 aaKnown RBP11.1□□□□□ -0.63
TDP1-211ENST00000555178 NAP1L3Q99457 506 aaPredicted RBP11.1□□□□□ -0.63
TDP1-211ENST00000555178 LRRC1Q9BTT6 524 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 MAK16Q9BXY0 300 aaKnown RBP11.1□□□□□ -0.63
TDP1-211ENST00000555178 DCLK3Q9C098 648 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 DNPEPQ9ULA0 475 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 HEY1Q9Y5J3 304 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 MUC3AQ02505 3323 aa11.1□□□□□ -0.63
TDP1-211ENST00000555178 MYO18AQ92614 2054 aaKnown RBP11.09□□□□□ -0.63
TDP1-211ENST00000555178 ANTXRLA6NF34 631 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 HEPACAM2A8MVW5 462 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 TRIM24O15164 1050 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 RAD51CO43502 376 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 PHF2O75151 1096 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 ARSAP15289 507 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 DDX6P26196 483 aaKnown RBP eCLIP11.09□□□□□ -0.63
TDP1-211ENST00000555178 EPHB2P29323 1055 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 MTHFRP42898 656 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 NRLP54845 237 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 ELF2Q15723 593 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 TPGS1Q6ZTW0 290 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 CHSY1Q86X52 802 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 TMEM25Q86YD3 366 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 ATP6V0D2Q8N8Y2 350 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 MAFAQ8NHW3 353 aaPredicted RBP11.09□□□□□ -0.63
TDP1-211ENST00000555178 MAGOHBQ96A72 148 aaKnown RBP11.09□□□□□ -0.63
TDP1-211ENST00000555178 HAPLN3Q96S86 360 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 OSBPL2Q9H1P3 480 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 ZNF212Q9UDV6 495 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 GOLGA6L10A0A0M3HER8 536 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 EFCAB8A8MWE9 144 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 H3BRJ5 948 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 APOL1O14791 398 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 DCLK1O15075 740 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 ERCC2P18074 760 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 CETN2P41208 172 aa11.09□□□□□ -0.63
TDP1-211ENST00000555178 HARS2P49590 506 aaKnown RBP11.09□□□□□ -0.63
TDP1-211ENST00000555178 MESP2Q0VG99 397 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms