RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 VASPP50552 380 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 GSCP56915 257 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 RPL6Q02878 288 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 ZBTB16Q05516 673 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 LMAN2Q12907 356 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 SLC25A52Q3SY17 297 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 RAP1GAP2Q684P5 730 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 TMPRSS6Q8IU80 811 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 CCDC117Q8IWD4 279 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 LGI2Q8N0V4 545 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 FRMD1Q8N878 549 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 OR2T3Q8NH03 318 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 MYO19Q96H55 970 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 ZNF419Q96HQ0 510 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 PCED1AQ9H1Q7 454 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 ARHGEF38Q9NXL2 777 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 KIAA1522Q9P206 1035 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 TMEM59LQ9UK28 342 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 PILRBQ9UKJ0 227 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 INTS6Q9UL03 887 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 PAXBP1Q9Y5B6 917 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 LNP1A1A4G5 178 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 TM4SF5O14894 197 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 GDF9O60383 454 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 GRAP2O75791 330 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 GFPT2O94808 682 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 EPHX1P07099 455 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 SRPRAP08240 638 aaKnown RBP16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 CD6P30203 668 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 CSKP41240 450 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 PTGER3P43115 390 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 DHPSP49366 369 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 PLK1P53350 603 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 FMO1Q01740 532 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 CCDC6Q16204 474 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 FNDC3BQ53EP0 1204 aaKnown RBP16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 RABGAP1LQ5R372 815 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 FAM102AQ5T9C2 384 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 TMEFF1Q8IYR6 380 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 AOPEPQ8N6M6 819 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 CADM4Q8NFZ8 388 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 NEK11Q8NG66 645 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 CEP76Q8TAP6 659 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 PRCCQ92733 491 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 FOXJ1Q92949 421 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 SIPA1Q96FS4 1042 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 SPAG5Q96R06 1193 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 SUN2Q9UH99 717 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 MYO6Q9UM54 1294 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 ITIH6Q6UXX5 1313 aa16.58■□□□□ 0.24
CCDC88C-209ENST00000554872 M0QYT0 321 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 KHNYNO15037 678 aaKnown RBP16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 MOCS3O95396 460 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 CHRNB2P17787 502 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 TPMTP51580 245 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 UBXN1Q04323 297 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 PLEKHG6Q3KR16 790 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 ANO6Q4KMQ2 910 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 FSCBQ5H9T9 825 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 PITRM1Q5JRX3 1037 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 STPG1Q5TH74 334 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 TAF3Q5VWG9 929 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 FBXL22Q6P050 247 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 SLC23A3Q6PIS1 610 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 KIAA1324Q6UXG2 1013 aaKnown RBP16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 CFAP52Q8N1V2 620 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 CARNMT1Q8N4J0 409 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 CYB5D2Q8WUJ1 264 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 MRGPRX3Q96LB0 322 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 PPP1R9BQ96SB3 815 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 FUCA2Q9BTY2 467 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 ADAM33Q9BZ11 813 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 SLC6A17Q9H1V8 727 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 RXFP3Q9NSD7 469 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 PIGVQ9NUD9 493 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 WSB2Q9NYS7 404 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 STIM2Q9P246 746 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 CYP8B1Q9UNU6 501 aa16.57■□□□□ 0.24
CCDC88C-209ENST00000554872 SMTNL1A8MU46 457 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 H0Y626 953 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 ENDOD1O94919 500 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 UNGP13051 313 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 ATP1A3P13637 1013 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 CDK11BP21127 795 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 CENPCQ03188 943 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 SULT2A1Q06520 285 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 ZNF33AQ06730 810 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 NME3Q13232 169 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 AUHQ13825 339 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 KLHL40Q2TBA0 621 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 HNRNPA1L2Q32P51 320 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 NAA35Q5VZE5 725 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 TCEAL6Q6IPX3 200 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 CXorf57Q6NSI4 855 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 SLC41A1Q8IVJ1 513 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 DHX40Q8IX18 779 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 ZNF683Q8IZ20 524 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 CCAR2Q8N163 923 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms