RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MCUR1Q96AQ8 359 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 E2F7Q96AV8 911 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 SIGLEC10Q96LC7 697 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 APBA2Q99767 749 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 EBF4Q9BQW3 602 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 MTG1Q9BT17 334 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 NACA2Q9H009 215 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 POPDC2Q9HBU9 364 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 PNPOQ9NVS9 261 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 RNF186Q9NXI6 227 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 CNTN3Q9P232 1028 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 SMG5Q9UPR3 1016 aaKnown RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 TRPV2Q9Y5S1 764 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 ACTL7AQ9Y615 435 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 USH1CQ9Y6N9 552 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 MGAMO43451 1857 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 ITM2AO43736 263 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 B4GALT3O60512 393 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 TADA2AO75478 443 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 KRT38O76015 456 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 HAUS5O94927 633 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 PRKCGP05129 697 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 FYNP06241 537 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 SETSIPP0DME0 302 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 ESRRAP11474 423 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 CPB1P15086 417 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 CCL23P55773 120 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 SARNPP82979 210 aaKnown RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 IRF9Q00978 393 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 ZBTB17Q13105 803 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 USP4Q13107 963 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 UBAP2LQ14157 1087 aaKnown RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 PTPRCAPQ14761 206 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 PDK4Q16654 411 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 SLC25A52Q3SY17 297 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 MGAT5BQ3V5L5 792 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 SPDYCQ5MJ68 293 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 LGSNQ5TDP6 509 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 EMC10Q5UCC4 262 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 TTC39BQ5VTQ0 682 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 RFWD3Q6PCD5 774 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 DRICH1Q6PGQ1 229 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 CEP128Q6ZU80 1094 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 CNPY4Q8N129 248 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 CRYBG2Q8N1P7 616 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 BANPQ8N9N5 519 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 ANKLE1Q8NAG6 615 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 MCUQ8NE86 351 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 DENND1AQ8TEH3 1009 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 PDCD6IPQ8WUM4 868 aaKnown RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 SLC44A1Q8WWI5 657 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 EXOC2Q96KP1 924 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 MARK4Q96L34 752 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 FCRL3Q96P31 734 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 EBNA1BP2Q99848 306 aaKnown RBP5.74□□□□□ -1.49
LIMA1-215ENST00000552823 FERMT1Q9BQL6 677 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 NFKBIZQ9BYH8 718 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 PPP1R12CQ9BZL4 782 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 KDM4CQ9H3R0 1056 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 CYP4F12Q9HCS2 524 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 LGALS13Q9UHV8 139 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 SLC24A2Q9UI40 661 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 FZD10Q9ULW2 581 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 DNAJC16Q9Y2G8 782 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 PPME1Q9Y570 386 aa5.74□□□□□ -1.49
LIMA1-215ENST00000552823 A0A0A0MRY4 1105 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 RBM47A0AV96 593 aaKnown RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SDR42E2A6NKP2 422 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 XPO1O14980 1071 aaKnown RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 CFLARO15519 480 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 TYROBPO43914 113 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 GJB3O75712 270 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ATP6V1G2O95670 118 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 IRF1P10914 325 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ACADSBP45954 432 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 DAOAP59103 153 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 KYAT1Q16773 422 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 FASTKD1Q53R41 847 aaKnown RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 MORN1Q5T089 497 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SPOUT1Q5T280 376 aaKnown RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 C14orf80Q86SX3 495 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SAPCD2Q86UD0 394 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ABI1Q8IZP0 508 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 PLD6Q8N2A8 252 aaKnown RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 OR6P1Q8NGX9 317 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 FBXO27Q8NI29 283 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SHKBP1Q8TBC3 707 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 PPP4R1Q8TF05 950 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 HSFY1Q96LI6 401 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SPATA13Q96N96 652 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ZNF670Q9BS34 389 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 FICDQ9BVA6 458 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 COLEC11Q9BWP8 271 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 OXCT2Q9BYC2 517 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 C20orf27Q9GZN8 174 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 NMUR2Q9GZQ4 415 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 BRD8Q9H0E9 1235 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 BFARQ9NZS9 450 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 A0A1W2PQH9 124 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms