RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ECT2Q9H8V3 914 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 SYBUQ9NX95 663 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 MOCS1Q9NZB8 636 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 MAGED2Q9UNF1 606 aaPredicted RBP16.77■□□□□ 0.28
COL4A1-204ENST00000543140 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.77■□□□□ 0.28
COL4A1-204ENST00000543140 PTPRDP23468 1912 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 CASP8AP2Q9UKL3 1982 aa16.77■□□□□ 0.27
COL4A1-204ENST00000543140 RFPL1O75677 317 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 DDHD2O94830 711 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 ALDH1A1P00352 501 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 ALADP13716 330 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 YWHAHQ04917 246 aaPredicted RBP16.76■□□□□ 0.27
COL4A1-204ENST00000543140 RWDD4Q6NW29 188 aaKnown RBP16.76■□□□□ 0.27
COL4A1-204ENST00000543140 TBC1D1Q86TI0 1168 aaPredicted RBP16.76■□□□□ 0.27
COL4A1-204ENST00000543140 ARNTL2Q8WYA1 636 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 SUSD3Q96L08 255 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 EPAS1Q99814 870 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 RRN3Q9NYV6 651 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 NLRC5Q86WI3 1866 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 ZBTB24O43167 697 aaPredicted RBP16.76■□□□□ 0.27
COL4A1-204ENST00000543140 KRT38O76015 456 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 MLNP12872 115 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 BGNP21810 368 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 HCAR3P49019 387 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 MBTPS1Q14703 1052 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 SPATA2LQ8IUW3 424 aaPredicted RBP16.76■□□□□ 0.27
COL4A1-204ENST00000543140 OR52K1Q8NGK4 314 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 IRGQQ8WZA9 623 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 PCMTD2Q9NV79 361 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 SFMBT1Q9UHJ3 866 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 DCTN4Q9UJW0 460 aa16.76■□□□□ 0.27
COL4A1-204ENST00000543140 MSI1O43347 362 aaKnown RBP16.75■□□□□ 0.27
COL4A1-204ENST00000543140 TOP3BO95985 862 aaKnown RBP16.75■□□□□ 0.27
COL4A1-204ENST00000543140 SKIP12755 728 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 SLC5A3P53794 718 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 NCALDP61601 193 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 BNIP1Q12981 228 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 FAM26DQ5JW98 314 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 GLB1LQ6UWU2 654 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 SCN4BQ8IWT1 228 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 UROC1Q96N76 676 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 GORASP1Q9BQQ3 440 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 MECRQ9BV79 373 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 EIF2B3Q9NR50 452 aaKnown RBP16.75■□□□□ 0.27
COL4A1-204ENST00000543140 KLC4Q9NSK0 619 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 TRIM33Q9UPN9 1127 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 THSD7BQ9C0I4 1608 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 DHRS4L1P0CG22 281 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 SERPINB4P48594 390 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 PPIDQ08752 370 aaKnown RBP16.75■□□□□ 0.27
COL4A1-204ENST00000543140 ZBTB17Q13105 803 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 CRYMQ14894 314 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 SLC39A12Q504Y0 691 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 CLLU1OSQ5K130 101 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 SDHAF4Q5VUM1 108 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 GBP7Q8N8V2 638 aaPredicted RBP16.75■□□□□ 0.27
COL4A1-204ENST00000543140 MYLK2Q9H1R3 596 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 ABI2Q9NYB9 513 aaPredicted RBP16.75■□□□□ 0.27
COL4A1-204ENST00000543140 IGSF9Q9P2J2 1179 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 PRG3Q9Y2Y8 225 aaPredicted RBP16.75■□□□□ 0.27
COL4A1-204ENST00000543140 USH1CQ9Y6N9 552 aa16.75■□□□□ 0.27
COL4A1-204ENST00000543140 GARSP41250 739 aaKnown RBP16.74■□□□□ 0.27
COL4A1-204ENST00000543140 PLEKHG4Q58EX7 1191 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 CYB5D1Q6P9G0 228 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 KIF2BQ8N4N8 673 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 C10orf82Q8WW14 230 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 ERP27Q96DN0 273 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 GLT1D1Q96MS3 346 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 APOL2Q9BQE5 337 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 UBP1Q9NZI7 540 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 CHKBQ9Y259 395 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 PSAT1Q9Y617 370 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 OR1G1P47890 313 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 KCNJ2P63252 427 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 MAPRE1Q15691 268 aaKnown RBP16.74■□□□□ 0.27
COL4A1-204ENST00000543140 BTBD8Q5XKL5 378 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 STEAP4Q687X5 459 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 NDUFAF2Q8N183 169 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 ARMC2Q8NEN0 867 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 CD99L2Q8TCZ2 262 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 LINC01599Q8WXQ3 324 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 TSSK1BQ9BXA7 367 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 RGS18Q9NS28 235 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 DNAJB4Q9UDY4 337 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 PLLPQ9Y342 182 aa16.74■□□□□ 0.27
COL4A1-204ENST00000543140 NCAM2O15394 837 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 ERVK-10P10266 1014 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 PGAM1P18669 254 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 CD68P34810 354 aaPredicted RBP16.73■□□□□ 0.27
COL4A1-204ENST00000543140 FYB2Q5VWT5 728 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 DNAAF3Q8N9W5 541 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 RFWD2Q8NHY2 731 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 USP33Q8TEY7 942 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 LRRC37BQ96QE4 947 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 RPS6KL1Q9Y6S9 549 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 DFFAO00273 331 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 ALDH1A2O94788 518 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 JCHAINP01591 159 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 F7P08709 466 aaPredicted RBP16.73■□□□□ 0.27
COL4A1-204ENST00000543140 NFKB1P19838 968 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms