RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PCDHB18PQ96TA0 734 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 TMEM245Q9H330 911 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 VPS45Q9NRW7 570 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 PIGVQ9NUD9 493 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 TMEM59LQ9UK28 342 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 CYP8B1Q9UNU6 501 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 GOLGA8SH3BPF8 625 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 SYNCRIPO60506 623 aaKnown RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 FOXD2O60548 495 aaPredicted RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 ZNF217O75362 1048 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 ATP5BP06576 529 aaKnown RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 DLDP09622 509 aaKnown RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 POLR2EP19388 210 aaKnown RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 FLT3P36888 993 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 CSKP41240 450 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 PTGER3P43115 390 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 CXCR3P49682 368 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 SULT1E1P49888 294 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 IQCB1Q15051 598 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 TCEAL6Q6IPX3 200 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 FBXL22Q6P050 247 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 SLC36A4Q6YBV0 504 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 ARMCX6Q7L4S7 300 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 CYP2U1Q7Z449 544 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 CIR1Q86X95 450 aaPredicted RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 TMPRSS6Q8IU80 811 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 C12orf50Q8NA57 414 aaPredicted RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 TCEAL3Q969E4 200 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 PGAP3Q96FM1 320 aaPredicted RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 TBCBQ99426 244 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 PRDM16Q9HAZ2 1276 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 RTN4Q9NQC3 1192 aaKnown RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 ANLNQ9NQW6 1124 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 RXFP3Q9NSD7 469 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 CDV3Q9UKY7 258 aaKnown RBP15.29■□□□□ 0.04
USP28-204ENST00000537642 STAP1Q9ULZ2 295 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 PLA2G4CQ9UP65 541 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 HS3ST4Q9Y661 456 aa15.29■□□□□ 0.04
USP28-204ENST00000537642 SYCE3A1L190 88 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 H0Y626 953 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 I6L893 689 aaPredicted RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 PAGE1O75459 146 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 ADCY5O95622 1261 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 UNGP13051 313 aaPredicted RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 SDHBP21912 280 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 MMP8P22894 467 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 GGCXP38435 758 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 ATXN1P54253 815 aaKnown RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 RPL6Q02878 288 aaKnown RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 CAMK2GQ13555 558 aaPredicted RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 AUHQ13825 339 aaKnown RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 SLC25A52Q3SY17 297 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 AASDHQ4L235 1098 aaPredicted RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 PITRM1Q5JRX3 1037 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 SPDYCQ5MJ68 293 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 TRIM72Q6ZMU5 477 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 C14orf80Q86SX3 495 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 METTL3Q86U44 580 aaKnown RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 CCDC117Q8IWD4 279 aaPredicted RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 CCAR2Q8N163 923 aaKnown RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 DEFB119Q8N690 84 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 SLC30A5Q8TAD4 765 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 NETO1Q8TDF5 533 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 IGSF8Q969P0 613 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 MYO19Q96H55 970 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 ARHGEF38Q9NXL2 777 aa15.28■□□□□ 0.04
USP28-204ENST00000537642 KIAA1522Q9P206 1035 aaPredicted RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 USP36Q9P275 1121 aaKnown RBP15.28■□□□□ 0.04
USP28-204ENST00000537642 LAMA1P25391 3075 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 A0A1B0GVM2 712 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 TCAF2A6NFQ2 919 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 AP5Z1O43299 807 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 ASLP04424 464 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 CTSOP43234 321 aaPredicted RBP15.27■□□□□ 0.04
USP28-204ENST00000537642 IRAK1P51617 712 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 CENPCQ03188 943 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 DEUP1Q05D60 604 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 PTP4A2Q12974 167 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 MTA1Q13330 715 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 CLEC16AQ2KHT3 1053 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 BRMS1LQ5PSV4 323 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 RABGAP1LQ5R372 815 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 TTC39BQ5VTQ0 682 aaPredicted RBP15.27■□□□□ 0.04
USP28-204ENST00000537642 ARCQ7LC44 396 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 BNIPLQ7Z465 357 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 PHLDB2Q86SQ0 1253 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 APCDD1Q8J025 514 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 OR2T3Q8NH03 318 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 PIGKQ92643 395 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 SIPA1Q96FS4 1042 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 MRGPRX3Q96LB0 322 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 CFAP57Q96MR6 1250 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 RPRD1AQ96P16 312 aaPredicted RBP15.27■□□□□ 0.04
USP28-204ENST00000537642 C11orf70Q9BRQ4 267 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 TKTL2Q9H0I9 626 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 WDCPQ9H6R7 721 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 ITM2CQ9NQX7 267 aa15.27■□□□□ 0.04
USP28-204ENST00000537642 METTL5Q9NRN9 209 aaKnown RBP15.27■□□□□ 0.04
USP28-204ENST00000537642 VANGL2Q9ULK5 521 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms