RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 C1orf74Q96LT6 269 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 PPP1R9BQ96SB3 815 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 PRMT1Q99873 361 aaKnown RBP7.26□□□□□ -1.25
VPS50-218ENST00000485994 TPSD1Q9BZJ3 242 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 PCED1AQ9H1Q7 454 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 GANQ9H2C0 597 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 HSD3B7Q9H2F3 369 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 RETREG1Q9H6L5 497 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 WSB2Q9NYS7 404 aaPredicted RBP7.26□□□□□ -1.25
VPS50-218ENST00000485994 USP36Q9P275 1121 aaKnown RBP7.26□□□□□ -1.25
VPS50-218ENST00000485994 MBD1Q9UIS9 605 aaPredicted RBP7.26□□□□□ -1.25
VPS50-218ENST00000485994 GGA2Q9UJY4 613 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 USP18Q9UMW8 372 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 SIK3Q9Y2K2 1263 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 FHOD1Q9Y613 1164 aa7.26□□□□□ -1.25
VPS50-218ENST00000485994 TNRC6BQ9UPQ9 1833 aaKnown RBP7.26□□□□□ -1.25
VPS50-218ENST00000485994 IGHV1OR15-9A0A0B4J2B8 117 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 GOLGA6L7A0A1B0GV03 622 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 TYW5A2RUC4 315 aaKnown RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 F8VZ95 297 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 PIK3R2O00459 728 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 TSPAN3O60637 253 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 TBL1XO60907 577 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 DAB1O75553 588 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 CAVIN2O95810 425 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 APOEP02649 317 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 ERBB2P04626 1255 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 SRPRAP08240 638 aaKnown RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 PABPC1P11940 636 aaKnown RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 POLR2EP19388 210 aaKnown RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 NDUFV2P19404 249 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 ABCB4P21439 1286 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 OXTRP30559 389 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 CCR1P32246 355 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 SOX5P35711 763 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 MPLP40238 635 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 COPB1P53618 953 aaKnown RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 GSCP56915 257 aaPredicted RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 FOXC1Q12948 553 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 RAPGEF1Q13905 1077 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 STARD3Q14849 445 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 TAF5Q15542 800 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 SLC25A52Q3SY17 297 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 FUT11Q495W5 492 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 HSP90AA4PQ58FG1 418 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 ZC3H12AQ5D1E8 599 aaKnown RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 BRMS1LQ5PSV4 323 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 TTC39BQ5VTQ0 682 aaPredicted RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 MBLAC2Q68D91 279 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 OR6B2Q6IFH4 312 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 KIAA1211LQ6NV74 962 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 RFWD3Q6PCD5 774 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 SLC23A3Q6PIS1 610 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 CHST9Q7L1S5 443 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 RABEPKQ7Z6M1 372 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 TAC4Q86UU9 113 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 ERICH1Q86X53 443 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 SYT12Q8IV01 421 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 DEFB106AQ8N104 65 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 PGBD3Q8N328 593 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 MSANTD4Q8NCY6 345 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 CADM4Q8NFZ8 388 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 CEP76Q8TAP6 659 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 EPS8L1Q8TE68 723 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 HMGB4Q8WW32 186 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 FOXJ1Q92949 421 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 NPY6RQ99463 290 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 LSM14BQ9BX40 385 aaKnown RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 NAT10Q9H0A0 1025 aaKnown RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 VPS16Q9H269 839 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 PRDM16Q9HAZ2 1276 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 ABCB8Q9NUT2 735 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 ARHGEF38Q9NXL2 777 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 CACNA2D2Q9NY47 1150 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS50-218ENST00000485994 TMEM63CQ9P1W3 806 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 KIAA1522Q9P206 1035 aaPredicted RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 BCCIPQ9P287 314 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS50-218ENST00000485994 GMPR2Q9P2T1 348 aaKnown RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 TJP2Q9UDY2 1190 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 TMEM59LQ9UK28 342 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 PILRBQ9UKJ0 227 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 MYO6Q9UM54 1294 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 SCML1Q9UN30 329 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 PAXBP1Q9Y5B6 917 aa7.25□□□□□ -1.25
VPS50-218ENST00000485994 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.25□□□□□ -1.25
VPS50-218ENST00000485994 CXorf51AA0A1B0GTR3 108 aa7.24□□□□□ -1.25
VPS50-218ENST00000485994 TARSL2A2RTX5 802 aaKnown RBP7.24□□□□□ -1.25
VPS50-218ENST00000485994 DRGXA6NNA5 263 aa7.24□□□□□ -1.25
VPS50-218ENST00000485994 LGALS16A8MUM7 142 aa7.24□□□□□ -1.25
VPS50-218ENST00000485994 PES1O00541 588 aaKnown RBP7.24□□□□□ -1.25
VPS50-218ENST00000485994 KHNYNO15037 678 aaKnown RBP7.24□□□□□ -1.25
VPS50-218ENST00000485994 SYNCRIPO60506 623 aaKnown RBP7.24□□□□□ -1.25
VPS50-218ENST00000485994 MOCS3O95396 460 aa7.24□□□□□ -1.25
VPS50-218ENST00000485994 UNGP13051 313 aaPredicted RBP7.24□□□□□ -1.25
VPS50-218ENST00000485994 CDK11BP21127 795 aaKnown RBP7.24□□□□□ -1.25
VPS50-218ENST00000485994 TACR2P21452 398 aa7.24□□□□□ -1.25
VPS50-218ENST00000485994 BCKDHBP21953 392 aa7.24□□□□□ -1.25
VPS50-218ENST00000485994 MMP8P22894 467 aa7.24□□□□□ -1.25
VPS50-218ENST00000485994 STAT1P42224 750 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms