RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SEPT6Q14141 434 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 TFDP2Q14188 446 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 ZBTB6Q15916 424 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 TDRPQ86YL5 185 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 ZNF567Q8N184 647 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 IPMKQ8NFU5 416 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 HTR3CQ8WXA8 447 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 ZNF669Q96BR6 464 aaPredicted RBP8.61□□□□□ -1.03
CD44-208ENST00000428726 MIEF2Q96C03 454 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 ZNF570Q96NI8 536 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 OMDQ99983 421 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 PHACTR1Q9C0D0 580 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 KLC2Q9H0B6 622 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 YY1AP1Q9H869 796 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 SHROOM3Q8TF72 1996 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 EME2A4GXA9 379 aaPredicted RBP8.6□□□□□ -1.03
CD44-208ENST00000428726 SMAPO00193 183 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 ENO1P06733 434 aaKnown RBP8.6□□□□□ -1.03
CD44-208ENST00000428726 MYL2P10916 166 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 BMP1P13497 986 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 GCKP35557 465 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 PCK1P35558 622 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 TPI1P60174 286 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 ZBTB17Q13105 803 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 LRRC36Q1X8D7 754 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 PKDCCQ504Y2 493 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 BOLA3Q53S33 107 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 OTUD1Q5VV17 481 aaPredicted RBP8.6□□□□□ -1.03
CD44-208ENST00000428726 ANKRD23Q86SG2 305 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 CFAP52Q8N1V2 620 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 GIPC2Q8TF65 315 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 LRRC37BQ96QE4 947 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 CYTH2Q99418 400 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 MANSC1Q9H8J5 431 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 XPNPEP3Q9NQH7 507 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 PHBP35232 272 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 SLC8A3P57103 927 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 MRPS5P82675 430 aaKnown RBP8.6□□□□□ -1.03
CD44-208ENST00000428726 USP4Q13107 963 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 CTBP1Q13363 440 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 UBAP2LQ14157 1087 aaKnown RBP8.6□□□□□ -1.03
CD44-208ENST00000428726 KCNJ11Q14654 390 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 STILQ15468 1287 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 SLC39A12Q504Y0 691 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 ATG14Q6ZNE5 492 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 ZNF534Q76KX8 674 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 NLRP9Q7RTR0 991 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 ZNF467Q7Z7K2 595 aaPredicted RBP8.6□□□□□ -1.03
CD44-208ENST00000428726 SAPCD2Q86UD0 394 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 FAM35AQ86V20 835 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 TFB1MQ8WVM0 346 aaKnown RBP8.6□□□□□ -1.03
CD44-208ENST00000428726 EXT2Q93063 718 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 EXOC2Q96KP1 924 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 FCRL3Q96P31 734 aaPredicted RBP8.6□□□□□ -1.03
CD44-208ENST00000428726 PPP1R12CQ9BZL4 782 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 ZCWPW1Q9H0M4 648 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 ACSS3Q9H6R3 686 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 WDCPQ9H6R7 721 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 CYP4F11Q9HBI6 524 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 PPARGC1AQ9UBK2 798 aaKnown RBP8.6□□□□□ -1.03
CD44-208ENST00000428726 OR12D3Q9UGF7 316 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 VANGL2Q9ULK5 521 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 TEX264Q9Y6I9 313 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 PLXNA1Q9UIW2 1896 aa8.6□□□□□ -1.03
CD44-208ENST00000428726 HMX2A2RU54 273 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 RRN3P2A6NIE6 340 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 PLK1P53350 603 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 RASA2Q15283 850 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 DCAF4L1Q3SXM0 396 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 ZNF410Q86VK4 478 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 LONP2Q86WA8 852 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 RASAL3Q86YV0 1011 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 IFNL1Q8IU54 200 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 PLD6Q8N2A8 252 aaKnown RBP8.59□□□□□ -1.03
CD44-208ENST00000428726 RSRC1Q96IZ7 334 aaKnown RBP8.59□□□□□ -1.03
CD44-208ENST00000428726 MAGEB18Q96M61 343 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 TSSK1BQ9BXA7 367 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 FTHL17Q9BXU8 183 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 POPDC2Q9HBU9 364 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 ARL8BQ9NVJ2 186 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 SENP1Q9P0U3 644 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 SLC24A2Q9UI40 661 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 SLC12A4Q9UP95 1085 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 ARL2BPQ9Y2Y0 163 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 TPP1O14773 563 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 TYROBPO43914 113 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 DGKIO75912 1065 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 LRIG2O94898 1065 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 GSTA1P08263 222 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 NFKB1P19838 968 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 MATKP42679 507 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 CPT1AP50416 773 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 CCL23P55773 120 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 MXRA7P84157 204 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 BST1Q10588 318 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 DEFB128Q7Z7B8 93 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 RNF148Q8N7C7 305 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 CCDC124Q96CT7 223 aaKnown RBP8.59□□□□□ -1.03
CD44-208ENST00000428726 PABPC5Q96DU9 382 aaKnown RBP8.59□□□□□ -1.03
CD44-208ENST00000428726 ZNF419Q96HQ0 510 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms