RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 PAX7P23759 505 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 EIF3BP55884 814 aaKnown RBP10.59□□□□□ -0.71
COL6A3-205ENST00000392004 MARSP56192 900 aaKnown RBP10.59□□□□□ -0.71
COL6A3-205ENST00000392004 TAS2R40P59535 323 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 PITX1P78337 314 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-205ENST00000392004 LMNB2Q03252 620 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 KRT33BQ14525 404 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 ZKSCAN8Q15776 578 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-205ENST00000392004 QPCTQ16769 361 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 P3H1Q32P28 736 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 RGL4Q8IZJ4 473 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 UCMAQ8WVF2 138 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 SMOQ99835 787 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 ZSWIM1Q9BR11 485 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 MIR1-1HGQ9H1L0 117 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 CNGB3Q9NQW8 809 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 SPTA1P02549 2419 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 ZNF197O14709 1029 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 SCAMP1O15126 338 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 IL1BP01584 269 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 MX2P20592 715 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 MMP8P22894 467 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 LRRC73Q5JTD7 316 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 TAC4Q86UU9 113 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 ZBED8Q8IZ13 594 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 TTC13Q8NBP0 860 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 CASD1Q96PB1 797 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 XPO6Q96QU8 1125 aaKnown RBP10.59□□□□□ -0.71
COL6A3-205ENST00000392004 GPR63Q9BZJ6 419 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 SLC25A13Q9UJS0 675 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 RWDD3Q9Y3V2 267 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 INSL5Q9Y5Q6 135 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 DOCK2Q92608 1830 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 DNAJC8O75937 253 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-205ENST00000392004 CENPCQ03188 943 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 IZUMO3Q5VZ72 239 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 ANKRD33Q7Z3H0 272 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 DEFB123Q8N688 67 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 CCHCR1Q8TD31 782 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 HNRNPABQ99729 332 aaKnown RBP10.58□□□□□ -0.72
COL6A3-205ENST00000392004 PBX4Q9BYU1 374 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 ZFP14Q9HCL3 533 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 HCFC2Q9Y5Z7 792 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 CABIN1Q9Y6J0 2220 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 TIAM2Q8IVF5 1701 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 C3orf70A6NLC5 250 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-205ENST00000392004 DGKIO75912 1065 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 ZSCAN5DPP0CG00 497 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 CDC25CP30307 473 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 PDIA2Q13087 525 aaKnown RBP10.58□□□□□ -0.72
COL6A3-205ENST00000392004 XRCC4Q13426 336 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 LACTB2Q53H82 288 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-205ENST00000392004 TBC1D1Q86TI0 1168 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-205ENST00000392004 ARID3BQ8IVW6 561 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-205ENST00000392004 LGMNQ99538 433 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 FIS1Q9Y3D6 152 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 LINC01553A4QN01 128 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 ARHGAP42A6NI28 874 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 SIGLEC16A6NMB1 481 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 PIAS1O75925 651 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 ATP6V1G2O95670 118 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 AKT1P31749 480 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 MATKP42679 507 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 SPOCD1Q6ZMY3 1216 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 GPRIN1Q7Z2K8 1008 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 TDHQ8IZJ6 230 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 PPM1NQ8N819 430 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.58□□□□□ -0.72
COL6A3-205ENST00000392004 IRAK4Q9NWZ3 460 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 BFARQ9NZS9 450 aa10.58□□□□□ -0.72
COL6A3-205ENST00000392004 BAIAP3O94812 1187 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 ERCC2P18074 760 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 FSHRP23945 695 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 GPD2P43304 727 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 GPR17Q13304 367 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 ARHGEF7Q14155 803 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 PDK1Q15118 436 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 COBLL1Q53SF7 1204 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 FAM133BQ5BKY9 247 aaKnown RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 NUGGCQ68CJ6 796 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 PCGF5Q86SE9 256 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 CFAP61Q8NHU2 1237 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 MYLIPQ8WY64 445 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 CALR3Q96L12 384 aaKnown RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 STMN4Q9H169 189 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 ABCG8Q9H221 673 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 ADAM7Q9H2U9 754 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 BATF3Q9NR55 127 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 LIMD1Q9UGP4 676 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 IPO11Q9UI26 975 aaKnown RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 STYXL1Q9Y6J8 313 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 MAST2Q6P0Q8 1798 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 ATG2BQ96BY7 2078 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 TRIP12Q14669 1992 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 SCN4AP35499 1836 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 GOLGA8TH3BQL2 631 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 RGS16O15492 202 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 LZTS3O60299 673 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 RHOP08100 348 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 INHBAP08476 426 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms