RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MFSD11O43934 449 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 ZSCAN5DPP0CG00 497 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 ETS1P14921 441 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 OTUD4Q01804 1114 aaKnown RBP9.49□□□□□ -0.89
USP4-202ENST00000351842 ITKQ08881 620 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 ANKRD20A8PQ5CZ79 823 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 TFDP3Q5H9I0 405 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 RFX8Q6ZV50 586 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 OR7D4Q8NG98 312 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 OR6K2Q8NGY2 324 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 P3H4Q92791 437 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 HLA-CQ95604 372 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 CIPCQ9C0C6 399 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 DPH5Q9H2P9 285 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 ZFP14Q9HCL3 533 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 DNAJC17Q9NVM6 304 aaKnown RBP9.49□□□□□ -0.89
USP4-202ENST00000351842 MTMR10Q9NXD2 777 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 CD207Q9UJ71 328 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 SHROOM3Q8TF72 1996 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 ACSL4O60488 711 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 MTA2O94776 668 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 TCP1P17987 556 aaKnown RBP9.49□□□□□ -0.89
USP4-202ENST00000351842 TACR2P21452 398 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 GLDCP23378 1020 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 KDSRQ06136 332 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 POM121L1PQ3SYA9 428 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 NUGGCQ68CJ6 796 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 TMCO3Q6UWJ1 677 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 SLC13A5Q86YT5 568 aaPredicted RBP9.49□□□□□ -0.89
USP4-202ENST00000351842 CREG2Q8IUH2 290 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 ZDHHC14Q8IZN3 488 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 NPWQ8N729 165 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 MAFAQ8NHW3 353 aaPredicted RBP9.49□□□□□ -0.89
USP4-202ENST00000351842 CD101Q93033 1021 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 ASIC4Q96FT7 647 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 TRMT2BQ96GJ1 504 aaKnown RBP9.49□□□□□ -0.89
USP4-202ENST00000351842 BTN2A3PQ96KV6 586 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 TRIM62Q9BVG3 475 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 ARHGEF4Q9NR80 690 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 DUS2Q9NX74 493 aaKnown RBP9.49□□□□□ -0.89
USP4-202ENST00000351842 UBP1Q9NZI7 540 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 CDC23Q9UJX2 597 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 C2orf16Q68DN1 1984 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 OTOL1A6NHN0 477 aaPredicted RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 BTNL10A8MVZ5 291 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 H3BRJ5 948 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 PSTPIP1O43586 416 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 ZDHHC11BP0C7U3 371 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 PCK1P35558 622 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 WASP42768 502 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 CDKN2BP42772 138 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 IFNAR2P48551 515 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 FAM193AP78312 1265 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 AAK1Q2M2I8 961 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 ACCSLQ4AC99 568 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 DENND2CQ68D51 928 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 PTCRAQ6ISU1 281 aaPredicted RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 DARS2Q6PI48 645 aaKnown RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 WFDC5Q8TCV5 224 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 RBM41Q96IZ5 413 aaKnown RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 RIPOR3Q96MK2 946 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 AGAP3Q96P47 875 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 NECAB3Q96P71 396 aaPredicted RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 PLA2G2FQ9BZM2 168 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 DNPEPQ9ULA0 475 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 NUMBLQ9Y6R0 609 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 FAM92AA1XBS5 289 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 CTAGE15A4D2H0 777 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 GRXCR2A6NFK2 248 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 APOL1O14791 398 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 CTAGE8P0CG41 777 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 ACVRL1P37023 503 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 MESP2Q0VG99 397 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 FSCBQ5H9T9 825 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 HP1BP3Q5SSJ5 553 aaPredicted RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 POLNQ7Z5Q5 900 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 CTAGE6Q86UF2 777 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 MFN1Q8IWA4 741 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 SFTPA1Q8IWL2 248 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 UNC45BQ8IWX7 931 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 CTAGE4Q8IX94 777 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 FAM71DQ8N9W8 422 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 ADAMTS19Q8TE59 1207 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 P2RY11Q96G91 374 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 TRIM51Q9BSJ1 452 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 KLF16Q9BXK1 252 aaPredicted RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 BRD9Q9H8M2 597 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 DZANK1Q9NVP4 752 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 IL37Q9NZH6 218 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 TYW5A2RUC4 315 aaKnown RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 GOLGA8MH3BSY2 632 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 C1RP00736 705 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 SLC4A1P02730 911 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 H2AFXP16104 143 aaPredicted RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 MAXP61244 160 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 PPP1R7Q15435 360 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 GREB1Q4ZG55 1949 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 FAM133BQ5BKY9 247 aaKnown RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 GSPT2Q8IYD1 628 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms