RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 SMARCD1Q96GM5 515 aa14.28□□□□□ -0.12
TRIM4-201ENST00000349062 GLT1D1Q96MS3 346 aa14.28□□□□□ -0.12
TRIM4-201ENST00000349062 COLEC11Q9BWP8 271 aa14.28□□□□□ -0.12
TRIM4-201ENST00000349062 SLC24A2Q9UI40 661 aa14.28□□□□□ -0.12
TRIM4-201ENST00000349062 CHADO15335 359 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 ZBTB24O43167 697 aaPredicted RBP14.27□□□□□ -0.12
TRIM4-201ENST00000349062 PMPCBO75439 489 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 KRT37O76014 449 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 CPA2P48052 419 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 YWHAHQ04917 246 aaPredicted RBP14.27□□□□□ -0.12
TRIM4-201ENST00000349062 SETDB1Q15047 1291 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 UPP1Q16831 310 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 CERCAMQ5T4B2 595 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 OTOAQ7RTW8 1153 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 RFWD2Q8NHY2 731 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 MAGEC3Q8TD91 643 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 STK32AQ8WU08 396 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 SRPK1Q96SB4 655 aaKnown RBP14.27□□□□□ -0.12
TRIM4-201ENST00000349062 PSAT1Q9Y617 370 aa14.27□□□□□ -0.12
TRIM4-201ENST00000349062 TMEM88BA6NKF7 163 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 TADA2AO75478 443 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 LRIG2O94898 1065 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 SLC4A1P02730 911 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 CCND1P24385 295 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 CCDC6Q16204 474 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 ARL13BQ3SXY8 428 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 IL31Q6EBC2 164 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 GLB1LQ6UWU2 654 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 IPMKQ8NFU5 416 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 NPY6RQ99463 290 aa14.27□□□□□ -0.13
TRIM4-201ENST00000349062 SEPT5Q99719 369 aaPredicted RBP14.27□□□□□ -0.13
TRIM4-201ENST00000349062 ZMYND8Q9ULU4 1186 aaPredicted RBP14.27□□□□□ -0.13
TRIM4-201ENST00000349062 FNDC3AQ9Y2H6 1198 aaKnown RBP14.27□□□□□ -0.13
TRIM4-201ENST00000349062 A0A0A0MRY4 1105 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 CFAP69A5D8W1 941 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 DAB1O75553 588 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 APOEP02649 317 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 GSTA1P08263 222 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 ZFXP17010 805 aaPredicted RBP14.26□□□□□ -0.13
TRIM4-201ENST00000349062 MXRA7P84157 204 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 SP3Q02447 781 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 MGAT5Q09328 741 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 SEPT6Q14141 434 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 CMC1Q7Z7K0 106 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 SLC26A11Q86WA9 606 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 SPATA13Q96N96 652 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 MANSC1Q9H8J5 431 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 EBF2Q9HAK2 575 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 ZNF358Q9NW07 568 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 SMG5Q9UPR3 1016 aaKnown RBP14.26□□□□□ -0.13
TRIM4-201ENST00000349062 SHROOM3Q8TF72 1996 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 BCLAF3A2AJT9 711 aaKnown RBP14.26□□□□□ -0.13
TRIM4-201ENST00000349062 MT-CYBP00156 380 aaPredicted RBP14.26□□□□□ -0.13
TRIM4-201ENST00000349062 ADGRD1Q6QNK2 874 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 STRADAQ7RTN6 431 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 RASSF3Q86WH2 238 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 CAB39LQ9H9S4 337 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 ZFATQ9P243 1243 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 DDHD2O94830 711 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 CPB1P15086 417 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 NFKB1P19838 968 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 KCNA4P22459 653 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 RCN2Q14257 317 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 PDK1Q15118 436 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 MTDHQ86UE4 582 aaKnown RBP14.26□□□□□ -0.13
TRIM4-201ENST00000349062 THEM5Q8N1Q8 247 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 RIBC1Q8N443 379 aaPredicted RBP14.26□□□□□ -0.13
TRIM4-201ENST00000349062 BHMTQ93088 406 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 SHCBP1LQ9BZQ2 653 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 ZCWPW1Q9H0M4 648 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 MYLK2Q9H1R3 596 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 FBXO6Q9NRD1 293 aaPredicted RBP14.26□□□□□ -0.13
TRIM4-201ENST00000349062 ARMCX1Q9P291 453 aa14.26□□□□□ -0.13
TRIM4-201ENST00000349062 NKX1-2Q9UD57 310 aaPredicted RBP14.26□□□□□ -0.13
TRIM4-201ENST00000349062 G3BP2Q9UN86 482 aaKnown RBP14.26□□□□□ -0.13
TRIM4-201ENST00000349062 AVPR1AP37288 418 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 ETFBP38117 255 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 EFEMP1Q12805 493 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 NR1H3Q13133 447 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 HSP90AA5PQ58FG0 334 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 FYB2Q5VWT5 728 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 AP1ARQ63HQ0 302 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 DEFB128Q7Z7B8 93 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 SLC25A41Q8N5S1 370 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 DQX1Q8TE96 717 aaKnown RBP14.25□□□□□ -0.13
TRIM4-201ENST00000349062 MFSD3Q96ES6 412 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 QKIQ96PU8 341 aaKnown RBP eCLIP14.25□□□□□ -0.13
TRIM4-201ENST00000349062 LRRC37BQ96QE4 947 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 FRMD8P1Q9BZ68 369 aaPredicted RBP14.25□□□□□ -0.13
TRIM4-201ENST00000349062 VANGL2Q9ULK5 521 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 SCN4AP35499 1836 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 UNCXA6NJT0 531 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 SNRPAP09012 282 aaKnown RBP14.25□□□□□ -0.13
TRIM4-201ENST00000349062 LRPAP1P30533 357 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 MAXP61244 160 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 RPL10AP62906 217 aaKnown RBP14.25□□□□□ -0.13
TRIM4-201ENST00000349062 POU6F1Q14863 301 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 MTFR1Q15390 333 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 CHI3L2Q15782 390 aa14.25□□□□□ -0.13
TRIM4-201ENST00000349062 FAM171A1Q5VUB5 890 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms