RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 YME1L1Q96TA2 773 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 THTPAQ9BU02 230 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 RC3H2Q9HBD1 1191 aaKnown RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 APOBEC3GQ9HC16 384 aaKnown RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.62□□□□□ -0.713e-19■■■■■ 242.2
UPF3B-201ENST00000276201 CHCHD3Q9NX63 227 aaKnown RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 PPM1HQ9ULR3 514 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 TTLL3Q9Y4R7 772 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 INSL6Q9Y581 213 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CHD7Q9P2D1 2997 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 A0A1B0GVG6 124 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 TMCC1O94876 653 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 LDHAP00338 332 aaKnown RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 ASLP04424 464 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 BPGMP07738 259 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CFHP08603 1231 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CCDC166P0CW27 439 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CPA3P15088 417 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 TCF4P15884 667 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 ALOX15P16050 662 aaPredicted RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 ACAT1P24752 427 aaKnown RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CNTFP26441 200 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 GJC1P36383 396 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 SERPINB9P50453 376 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CHN2P52757 468 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 FAM189BP81408 668 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 OGDHQ02218 1023 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 MBTD1Q05BQ5 628 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 MSLNQ13421 630 aaPredicted RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 USP41Q3LFD5 358 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 BBS9Q3SYG4 887 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 ANKRD20A4Q4UJ75 823 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 RABGAP1LQ5R372 815 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 BORAQ6PGQ7 559 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 UGT2A3Q6UWM9 527 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 C4orf22Q6V702 233 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CAPN12Q6ZSI9 719 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 SLC24A5Q71RS6 500 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 PRPF39Q86UA1 669 aaKnown RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 RASSF3Q86WH2 238 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 MIPOL1Q8TD10 442 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 ZNF606Q8WXB4 792 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 IQCGQ9H095 443 aaKnown RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 EBF3Q9H4W6 596 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 THAP1Q9NVV9 213 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 ARMCX1Q9P291 453 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 PADI4Q9UM07 663 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 A0A0B4J269 797 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 LINC01553A4QN01 128 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 LRRIQ4A6NIV6 560 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 GOLGA8RI6L899 631 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 IFNB1P01574 187 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 ZCCHC18P0CG32 403 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 KDELR1P24390 212 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 ELK3P41970 407 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 PLCB3Q01970 1234 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 TUBB3Q13509 450 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 HADHQ16836 314 aaKnown RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 KBTBD12Q3ZCT8 623 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 SLFN12LQ6IEE8 588 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 TMEM270Q6UE05 265 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 TAS1R3Q7RTX0 852 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 CCDC33Q8N5R6 958 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 ZNF689Q96CS4 500 aaPredicted RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 ZFRQ96KR1 1074 aaKnown RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 NFKBIZQ9BYH8 718 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 CHST12Q9NRB3 414 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 IRAK4Q9NWZ3 460 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 PIN4Q9Y237 131 aaKnown RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 TRIM49D1C9J1S8 452 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 F8VP50 259 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 RFPL1O75677 317 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 DGKIO75912 1065 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 ENDOD1O94919 500 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 VCLP18206 1134 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 HOXA11P31270 313 aaPredicted RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 GATMP50440 423 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 GDF10P55107 478 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 MRPS5P82675 430 aaKnown RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 GAD2Q05329 585 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 AMHR2Q16671 573 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 OGFRL1Q5TC84 451 aaPredicted RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 RAPH1Q70E73 1250 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 MCUQ8NE86 351 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 CMASQ8NFW8 434 aaPredicted RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 FBXO27Q8NI29 283 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 ACMSDQ8TDX5 336 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 STON2Q8WXE9 905 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 MRRFQ96E11 262 aaKnown RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 HIC2Q96JB3 615 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 KLF6Q99612 283 aaPredicted RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 CDX2Q99626 313 aaPredicted RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 FAM213AQ9BRX8 229 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 C12orf65Q9H3J6 166 aaKnown RBP10.61□□□□□ -0.71
UPF3B-201ENST00000276201 NRDE2Q9H7Z3 1164 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 KLHL11Q9NVR0 708 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 DNAJC28Q9NX36 388 aa10.61□□□□□ -0.71
UPF3B-201ENST00000276201 TCRBV7S3A2A0A539 114 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 EPOPA6NHQ4 379 aa10.6□□□□□ -0.71
UPF3B-201ENST00000276201 GOLGA8SH3BPF8 625 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms