RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 DEUP1Q05D60 604 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 TPRG1Q6ZUI0 275 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 FAM217AQ8IXS0 508 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 ADGRG2Q8IZP9 1017 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 RIN3Q8TB24 985 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 CENPIQ92674 756 aaPredicted RBP21.36■■□□□ 1.01
VPS53-210ENST00000571456 FCRL2Q96LA5 508 aaPredicted RBP21.36■■□□□ 1.01
VPS53-210ENST00000571456 MCEEQ96PE7 176 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 WNT6Q9Y6F9 365 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 EPN1Q9Y6I3 576 aaPredicted RBP21.36■■□□□ 1.01
VPS53-210ENST00000571456 COL4A2P08572 1712 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 TMEM191CA6NGB0 347 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 MAN2B1O00754 1011 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 MSI1O43347 362 aaKnown RBP21.35■■□□□ 1.01
VPS53-210ENST00000571456 HMBSP08397 361 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 TDGF1P13385 188 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 AIF1P55008 147 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 PREPLQ4J6C6 727 aaPredicted RBP21.35■■□□□ 1.01
VPS53-210ENST00000571456 ADGRF1Q5T601 910 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 PRR23BQ6ZRT6 265 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 RALGPS2Q86X27 583 aaPredicted RBP21.35■■□□□ 1.01
VPS53-210ENST00000571456 DENND1CQ8IV53 801 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 BBS7Q8IWZ6 715 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 TTC16Q8NEE8 873 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 RNF34Q969K3 372 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 CALR3Q96L12 384 aaKnown RBP21.35■■□□□ 1.01
VPS53-210ENST00000571456 THAP2Q9H0W7 228 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 ECT2Q9H8V3 914 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 MARK1Q9P0L2 795 aa21.35■■□□□ 1.01
VPS53-210ENST00000571456 AGO1Q9UL18 857 aaKnown RBP21.35■■□□□ 1.01
VPS53-210ENST00000571456 MRPS17Q9Y2R5 130 aaKnown RBP21.35■■□□□ 1.01
VPS53-210ENST00000571456 FOXD2O60548 495 aaPredicted RBP21.34■■□□□ 1.01
VPS53-210ENST00000571456 NDUFA10O95299 355 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 KLKB1P03952 638 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 CYBBP04839 570 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 GAD2Q05329 585 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 FZD5Q13467 585 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 ARL13BQ3SXY8 428 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 CCDC14Q49A88 953 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 IL31Q6EBC2 164 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 ZNF852Q6ZMS4 543 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 RHOT2Q8IXI1 618 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 EMC1Q8N766 993 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 ZNF557Q8N988 423 aaPredicted RBP21.34■■□□□ 1.01
VPS53-210ENST00000571456 JOSD2Q8TAC2 188 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 ADAM32Q8TC27 787 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 CFAP57Q96MR6 1250 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 TBCBQ99426 244 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 EBF3Q9H4W6 596 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 WDCPQ9H6R7 721 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 HPS4Q9NQG7 708 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 SPTLC3Q9NUV7 552 aa21.34■■□□□ 1.01
VPS53-210ENST00000571456 KCNU1A8MYU2 1149 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 ACSL4O60488 711 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 EIF2DP41214 584 aaKnown RBP21.33■■□□□ 1.01
VPS53-210ENST00000571456 RPL7AP62424 266 aaKnown RBP21.33■■□□□ 1.01
VPS53-210ENST00000571456 KRT83P78385 493 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 NME3Q13232 169 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 PIGHQ14442 188 aaPredicted RBP21.33■■□□□ 1.01
VPS53-210ENST00000571456 TCEAL1Q15170 157 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 MPP7Q5T2T1 576 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 ZFYVE19Q96K21 471 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 SPHK2Q9NRA0 654 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 ARHGEF38Q9NXL2 777 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 MYO1AQ9UBC5 1043 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 IP6K2Q9UHH9 426 aa21.33■■□□□ 1.01
VPS53-210ENST00000571456 TYW5A2RUC4 315 aaKnown RBP21.32■■□□□ 1
VPS53-210ENST00000571456 HOXC11O43248 304 aaPredicted RBP21.32■■□□□ 1
VPS53-210ENST00000571456 RNF8O76064 485 aa21.32■■□□□ 1
VPS53-210ENST00000571456 MAGEA1P43355 309 aa21.32■■□□□ 1
VPS53-210ENST00000571456 DHCR24Q15392 516 aa21.32■■□□□ 1
VPS53-210ENST00000571456 MPPE1Q53F39 396 aa21.32■■□□□ 1
VPS53-210ENST00000571456 ZC3H12AQ5D1E8 599 aaKnown RBP21.32■■□□□ 1
VPS53-210ENST00000571456 OTUD1Q5VV17 481 aaPredicted RBP21.32■■□□□ 1
VPS53-210ENST00000571456 TRNP1Q6NT89 227 aa21.32■■□□□ 1
VPS53-210ENST00000571456 MAMSTRQ6ZN01 415 aa21.32■■□□□ 1
VPS53-210ENST00000571456 PHLDB2Q86SQ0 1253 aa21.32■■□□□ 1
VPS53-210ENST00000571456 FAM172AQ8WUF8 416 aa21.32■■□□□ 1
VPS53-210ENST00000571456 NTAN1Q96AB6 310 aa21.32■■□□□ 1
VPS53-210ENST00000571456 NUP85Q9BW27 656 aa21.32■■□□□ 1
VPS53-210ENST00000571456 LINC00597Q9H2U6 94 aa21.32■■□□□ 1
VPS53-210ENST00000571456 PIGVQ9NUD9 493 aa21.32■■□□□ 1
VPS53-210ENST00000571456 GTSE1Q9NYZ3 720 aa21.32■■□□□ 1
VPS53-210ENST00000571456 DSPP15924 2871 aaKnown RBP21.32■■□□□ 1
VPS53-210ENST00000571456 SPAG17Q6Q759 2223 aa21.31■■□□□ 1
VPS53-210ENST00000571456 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.31■■□□□ 1
VPS53-210ENST00000571456 MYO1FO00160 1098 aa21.31■■□□□ 1
VPS53-210ENST00000571456 ARHGAP6O43182 974 aa21.31■■□□□ 1
VPS53-210ENST00000571456 ATMINO43313 823 aaPredicted RBP21.31■■□□□ 1
VPS53-210ENST00000571456 CYP17A1P05093 508 aa21.31■■□□□ 1
VPS53-210ENST00000571456 PSMA2P25787 234 aa21.31■■□□□ 1
VPS53-210ENST00000571456 PITX1P78337 314 aaPredicted RBP21.31■■□□□ 1
VPS53-210ENST00000571456 ATP11AP98196 1134 aa21.31■■□□□ 1
VPS53-210ENST00000571456 TTC39BQ5VTQ0 682 aaPredicted RBP21.31■■□□□ 1
VPS53-210ENST00000571456 TRIM68Q6AZZ1 485 aa21.31■■□□□ 1
VPS53-210ENST00000571456 TMEM139Q8IV31 216 aa21.31■■□□□ 1
VPS53-210ENST00000571456 NIPA2Q8N8Q9 360 aa21.31■■□□□ 1
VPS53-210ENST00000571456 RFFLQ8WZ73 363 aa21.31■■□□□ 1
VPS53-210ENST00000571456 WBP2Q969T9 261 aa21.31■■□□□ 1
VPS53-210ENST00000571456 C1orf74Q96LT6 269 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms