RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PCDHA11Q9Y5I1 949 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 PHGDHO43175 533 aaKnown RBP14.88□□□□□ -0.03
VPS35-210ENST00000568784 COX4I1P13073 169 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 CCDC130P13994 396 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 CCR10P46092 362 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 ABCE1P61221 599 aaKnown RBP14.88□□□□□ -0.03
VPS35-210ENST00000568784 STILQ15468 1287 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 PPM1LQ5SGD2 360 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 TDRD5Q8NAT2 981 aaKnown RBP14.88□□□□□ -0.03
VPS35-210ENST00000568784 SNRNP27Q8WVK2 155 aaKnown RBP14.88□□□□□ -0.03
VPS35-210ENST00000568784 RNF34Q969K3 372 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 MCRS1Q96EZ8 462 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 LENG8Q96PV6 779 aaPredicted RBP14.88□□□□□ -0.03
VPS35-210ENST00000568784 PHF12Q96QT6 1004 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 FAM192AQ9GZU8 254 aa14.88□□□□□ -0.03
VPS35-210ENST00000568784 C20orf96Q9NUD7 363 aaPredicted RBP14.88□□□□□ -0.03
VPS35-210ENST00000568784 C15orf38-AP3S2A0A0A6YYH1 394 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 PIGRP01833 764 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 TXNP10599 105 aaKnown RBP14.87□□□□□ -0.03
VPS35-210ENST00000568784 UQCRBP14927 111 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 TGM2P21980 687 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 ALDH1A3P47895 512 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 SULT1E1P49888 294 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 RBP5P82980 135 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 EN1Q05925 392 aaPredicted RBP14.87□□□□□ -0.03
VPS35-210ENST00000568784 POU5F1BQ06416 359 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 TBCCQ15814 346 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 FKBP1CQ5VVH2 108 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 ARPINQ7Z6K5 226 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 OPTNQ96CV9 577 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 TCF7L2Q9NQB0 619 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 SPDYE16A6NNV3 312 aaPredicted RBP14.87□□□□□ -0.03
VPS35-210ENST00000568784 PYGLP06737 847 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 POLBP06746 335 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 TSHRP16473 764 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 GABRB2P47870 512 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 GEN1Q17RS7 908 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 RARS2Q5T160 578 aaKnown RBP14.87□□□□□ -0.03
VPS35-210ENST00000568784 KYAT3Q6YP21 454 aaKnown RBP14.87□□□□□ -0.03
VPS35-210ENST00000568784 RBM44Q6ZP01 1051 aaKnown RBP14.87□□□□□ -0.03
VPS35-210ENST00000568784 TRIML2Q8N7C3 387 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 EZH1Q92800 747 aaPredicted RBP14.87□□□□□ -0.03
VPS35-210ENST00000568784 SERPINI1Q99574 410 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 FRMD8Q9BZ67 464 aaPredicted RBP14.87□□□□□ -0.03
VPS35-210ENST00000568784 BFARQ9NZS9 450 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 A0A096LPK6 155 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 CSPG5O95196 566 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 PRAMEP78395 509 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 ACAP1Q15027 740 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 TMEM198Q66K66 360 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 SNX31Q8N9S9 440 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 MED10Q9BTT4 135 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 UBE2OQ9C0C9 1292 aaKnown RBP14.87□□□□□ -0.03
VPS35-210ENST00000568784 KLK14Q9P0G3 267 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 DCDC2Q9UHG0 476 aa14.87□□□□□ -0.03
VPS35-210ENST00000568784 ALDOAP04075 364 aaKnown RBP14.86□□□□□ -0.03
VPS35-210ENST00000568784 SLC10A2Q12908 348 aaPredicted RBP14.86□□□□□ -0.03
VPS35-210ENST00000568784 SLC5A9Q2M3M2 681 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 SLC9B1Q4ZJI4 515 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 CCDC185Q8N715 623 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 TRPV6Q9H1D0 765 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 DMAP1Q9NPF5 467 aaPredicted RBP14.86□□□□□ -0.03
VPS35-210ENST00000568784 STX16-NPEPL1H3BU86 382 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 KLF11O14901 512 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 VAV1P15498 845 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 MPSTP25325 297 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 SLC6A3Q01959 620 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 MAP7D1Q3KQU3 841 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 EME1Q96AY2 570 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 MRPL45Q9BRJ2 306 aaKnown RBP14.86□□□□□ -0.03
VPS35-210ENST00000568784 IARS2Q9NSE4 1012 aaKnown RBP14.86□□□□□ -0.03
VPS35-210ENST00000568784 ZNF180Q9UJW8 692 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 IL18RAPO95256 599 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 SRGAP2BP0DMP2 458 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 PRKCHP24723 683 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 RABGGTBP53611 331 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 TEX44Q53QW1 395 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 SH2D4BQ5SQS7 431 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 METTL7BQ6UX53 244 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 ARCQ7LC44 396 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 OR52B2Q96RD2 323 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 AGAP2Q99490 1192 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 GCOM2Q9BZD3 368 aaPredicted RBP14.86□□□□□ -0.03
VPS35-210ENST00000568784 SNX15Q9NRS6 342 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 CDY2AQ9Y6F7 541 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 CDY1Q9Y6F8 540 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 WNK3Q9BYP7 1800 aa14.86□□□□□ -0.03
VPS35-210ENST00000568784 HNRNPRO43390 633 aaKnown RBP14.85□□□□□ -0.03
VPS35-210ENST00000568784 CHRNGP07510 517 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 CDH5P33151 784 aaPredicted RBP14.85□□□□□ -0.03
VPS35-210ENST00000568784 CHN2P52757 468 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 NAGLUP54802 743 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 R3HDM1Q15032 1099 aaKnown RBP14.85□□□□□ -0.03
VPS35-210ENST00000568784 ACAD11Q709F0 780 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 RCN3Q96D15 328 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 COPG2Q9UBF2 871 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 KPNA7A9QM74 516 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 FGF3P11487 239 aaPredicted RBP14.85□□□□□ -0.03
VPS35-210ENST00000568784 IRF9Q00978 393 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 KLF10Q13118 480 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms