RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 TPMTP51580 245 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 DRAP1Q14919 205 aaPredicted RBP15.42■□□□□ 0.06
CLN3-213ENST00000565047 E2F5Q15329 346 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 DCAF6Q58WW2 860 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 TRIM61Q5EBN2 209 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 ARTNQ5T4W7 220 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 OTUD1Q5VV17 481 aaPredicted RBP15.42■□□□□ 0.06
CLN3-213ENST00000565047 MBLAC2Q68D91 279 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 FAM183BPQ6ZVS7 135 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 DEFB106AQ8N104 65 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 C1orf131Q8NDD1 294 aaKnown RBP15.42■□□□□ 0.06
CLN3-213ENST00000565047 ZNF397Q8NF99 534 aaPredicted RBP15.42■□□□□ 0.06
CLN3-213ENST00000565047 MRGPRX3Q96LB0 322 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 CAPN10Q9HC96 672 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 NFE2L3Q9Y4A8 694 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 PCDH15Q96QU1 1955 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 CEP192Q8TEP8 1941 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 CAPN9O14815 690 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 EPHX1P07099 455 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 UCHL3P15374 230 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 EEF1GP26641 437 aaKnown RBP15.41■□□□□ 0.06
CLN3-213ENST00000565047 CD6P30203 668 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 GABRB2P47870 512 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 LMAN2Q12907 356 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 STARD3Q14849 445 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 EFHC1Q5JVL4 640 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 IL31Q6EBC2 164 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 KIAA1324Q6UXG2 1013 aaKnown RBP15.41■□□□□ 0.06
CLN3-213ENST00000565047 SERPINA13PQ6UXR4 307 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 C11orf57Q6ZUT1 292 aaPredicted RBP15.41■□□□□ 0.06
CLN3-213ENST00000565047 SLC26A9Q7LBE3 791 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 CFAP52Q8N1V2 620 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 HJURPQ8NCD3 748 aaPredicted RBP15.41■□□□□ 0.06
CLN3-213ENST00000565047 OR2T3Q8NH03 318 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 DNASE2BQ8WZ79 361 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 SIPA1Q96FS4 1042 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 BTN2A3PQ96KV6 586 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 GANQ9H2C0 597 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 PLCB1Q9NQ66 1216 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 PRSS16Q9NQE7 514 aa15.41■□□□□ 0.06
CLN3-213ENST00000565047 ATXN2Q99700 1313 aaKnown RBP15.41■□□□□ 0.06
CLN3-213ENST00000565047 GON4LQ3T8J9 2241 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 ZBTB24O43167 697 aaPredicted RBP15.4■□□□□ 0.06
CLN3-213ENST00000565047 SYNCRIPO60506 623 aaKnown RBP15.4■□□□□ 0.06
CLN3-213ENST00000565047 HSF2BPO75031 334 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 KCNK5O95279 499 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 SERPINF2P08697 491 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 CYP11B1P15538 503 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 ENGP17813 658 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 DPP6P42658 865 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 SLC6A3Q01959 620 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 ARID5BQ14865 1188 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 MMS22LQ6ZRQ5 1243 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 MFN1Q8IWA4 741 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 ZNF366Q8N895 744 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 ZNF557Q8N988 423 aaPredicted RBP15.4■□□□□ 0.06
CLN3-213ENST00000565047 CADM4Q8NFZ8 388 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 NT5C3BQ969T7 300 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 TOE1Q96GM8 510 aaKnown RBP15.4■□□□□ 0.06
CLN3-213ENST00000565047 DDX50Q9BQ39 737 aaKnown RBP15.4■□□□□ 0.06
CLN3-213ENST00000565047 STK33Q9BYT3 514 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 FSCN3Q9NQT6 498 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.4■□□□□ 0.06
CLN3-213ENST00000565047 STIM2Q9P246 746 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 PLA2G4CQ9UP65 541 aa15.4■□□□□ 0.06
CLN3-213ENST00000565047 CNOT1A5YKK6 2376 aaKnown RBP15.39■□□□□ 0.05
CLN3-213ENST00000565047 C10orf142B7Z368 130 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 I6L893 689 aaPredicted RBP15.39■□□□□ 0.05
CLN3-213ENST00000565047 GRAP2O75791 330 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 LUC7L3O95232 432 aaKnown RBP15.39■□□□□ 0.05
CLN3-213ENST00000565047 MOCS2O96007 188 aaPredicted RBP15.39■□□□□ 0.05
CLN3-213ENST00000565047 TACR2P21452 398 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 KRT9P35527 623 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 BPIFB4P59827 614 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 DUOXA1Q1HG43 343 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 N4BP2L1Q5TBK1 243 aaPredicted RBP15.39■□□□□ 0.05
CLN3-213ENST00000565047 RAP1GAP2Q684P5 730 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 BNIPLQ7Z465 357 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 NOP9Q86U38 636 aaKnown RBP15.39■□□□□ 0.05
CLN3-213ENST00000565047 KDM1BQ8NB78 822 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 C1orf216Q8TAB5 229 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 CEP76Q8TAP6 659 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 PRCCQ92733 491 aaPredicted RBP15.39■□□□□ 0.05
CLN3-213ENST00000565047 HSPA12BQ96MM6 686 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 NPY6RQ99463 290 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 HSD3B7Q9H2F3 369 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 TMEM9BQ9NQ34 198 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 ANLNQ9NQW6 1124 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 TAB2Q9NYJ8 693 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 SLC6A14Q9UN76 642 aa15.39■□□□□ 0.05
CLN3-213ENST00000565047 LRRC10BA6NIK2 292 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 METTL12A8MUP2 240 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 F8VZ95 297 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 EPHB6O15197 1021 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 DAB1O75553 588 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 APOEP02649 317 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 ATP5BP06576 529 aaKnown RBP15.38■□□□□ 0.05
CLN3-213ENST00000565047 POLR2EP19388 210 aaKnown RBP15.38■□□□□ 0.05
CLN3-213ENST00000565047 TFE3P19532 575 aaPredicted RBP15.38■□□□□ 0.05
CLN3-213ENST00000565047 PMLP29590 882 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms