RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 E9PAM4 449 aa21.31■■□□□ 1
CLN3-212ENST00000564574 GFRA2O00451 464 aa21.31■■□□□ 1
CLN3-212ENST00000564574 NFATC1O95644 943 aa21.31■■□□□ 1
CLN3-212ENST00000564574 KDELR1P24390 212 aa21.31■■□□□ 1
CLN3-212ENST00000564574 SLC6A4P31645 630 aa21.31■■□□□ 1
CLN3-212ENST00000564574 ARL4AP40617 200 aa21.31■■□□□ 1
CLN3-212ENST00000564574 HCAR3P49019 387 aa21.31■■□□□ 1
CLN3-212ENST00000564574 ETF1P62495 437 aaKnown RBP21.31■■□□□ 1
CLN3-212ENST00000564574 EML3Q32P44 896 aa21.31■■□□□ 1
CLN3-212ENST00000564574 MANEALQ5VSG8 457 aa21.31■■□□□ 1
CLN3-212ENST00000564574 TTC39BQ5VTQ0 682 aaPredicted RBP21.31■■□□□ 1
CLN3-212ENST00000564574 RCOR2Q8IZ40 523 aa21.31■■□□□ 1
CLN3-212ENST00000564574 PYROXD2Q8N2H3 581 aa21.31■■□□□ 1
CLN3-212ENST00000564574 ATP2A3Q93084 1043 aa21.31■■□□□ 1
CLN3-212ENST00000564574 FAM83CQ9BQN1 747 aa21.31■■□□□ 1
CLN3-212ENST00000564574 RETREG1Q9H6L5 497 aa21.31■■□□□ 1
CLN3-212ENST00000564574 KCNK12Q9HB15 430 aa21.31■■□□□ 1
CLN3-212ENST00000564574 PCDH18Q9HCL0 1135 aa21.31■■□□□ 1
CLN3-212ENST00000564574 LIMD1Q9UGP4 676 aa21.31■■□□□ 1
CLN3-212ENST00000564574 IGLV3-10A0A075B6K4 115 aa21.3■■□□□ 1
CLN3-212ENST00000564574 ZNF487B1APH4 448 aa21.3■■□□□ 1
CLN3-212ENST00000564574 H3BRJ5 948 aa21.3■■□□□ 1
CLN3-212ENST00000564574 KIF2AO00139 706 aaPredicted RBP21.3■■□□□ 1
CLN3-212ENST00000564574 SCAMP3O14828 347 aaKnown RBP21.3■■□□□ 1
CLN3-212ENST00000564574 ZRANB2O95218 330 aaKnown RBP eCLIP21.3■■□□□ 1
CLN3-212ENST00000564574 CYBBP04839 570 aa21.3■■□□□ 1
CLN3-212ENST00000564574 HOXC13P31276 330 aa21.3■■□□□ 1
CLN3-212ENST00000564574 MARCKSL1P49006 195 aa21.3■■□□□ 1
CLN3-212ENST00000564574 MPPE1Q53F39 396 aa21.3■■□□□ 1
CLN3-212ENST00000564574 PPP6R3Q5H9R7 873 aaPredicted RBP21.3■■□□□ 1
CLN3-212ENST00000564574 FBXL22Q6P050 247 aa21.3■■□□□ 1
CLN3-212ENST00000564574 ZNF683Q8IZ20 524 aa21.3■■□□□ 1
CLN3-212ENST00000564574 ADGRG2Q8IZP9 1017 aa21.3■■□□□ 1
CLN3-212ENST00000564574 LGI2Q8N0V4 545 aa21.3■■□□□ 1
CLN3-212ENST00000564574 HJURPQ8NCD3 748 aaPredicted RBP21.3■■□□□ 1
CLN3-212ENST00000564574 TBC1D31Q96DN5 1066 aa21.3■■□□□ 1
CLN3-212ENST00000564574 ZNF670Q9BS34 389 aa21.3■■□□□ 1
CLN3-212ENST00000564574 TLR10Q9BXR5 811 aa21.3■■□□□ 1
CLN3-212ENST00000564574 LINC00597Q9H2U6 94 aa21.3■■□□□ 1
CLN3-212ENST00000564574 VANGL2Q9ULK5 521 aa21.3■■□□□ 1
CLN3-212ENST00000564574 SNX10Q9Y5X0 201 aa21.3■■□□□ 1
CLN3-212ENST00000564574 SPTBN5Q9NRC6 3674 aaKnown RBP21.29■■□□□ 1
CLN3-212ENST00000564574 LRRD1A4D1F6 860 aa21.29■■□□□ 1
CLN3-212ENST00000564574 DRGXA6NNA5 263 aa21.29■■□□□ 1
CLN3-212ENST00000564574 EEF2KO00418 725 aaKnown RBP21.29■■□□□ 1
CLN3-212ENST00000564574 CREB3O43889 395 aa21.29■■□□□ 1
CLN3-212ENST00000564574 LRIG2O94898 1065 aa21.29■■□□□ 1
CLN3-212ENST00000564574 GGCXP38435 758 aa21.29■■□□□ 1
CLN3-212ENST00000564574 CETN2P41208 172 aa21.29■■□□□ 1
CLN3-212ENST00000564574 TPI1P60174 286 aa21.29■■□□□ 1
CLN3-212ENST00000564574 COPS2P61201 443 aa21.29■■□□□ 1
CLN3-212ENST00000564574 ZP2Q05996 745 aa21.29■■□□□ 1
CLN3-212ENST00000564574 DPYSL3Q14195 570 aa21.29■■□□□ 1
CLN3-212ENST00000564574 GRM2Q14416 872 aa21.29■■□□□ 1
CLN3-212ENST00000564574 MPP7Q5T2T1 576 aa21.29■■□□□ 1
CLN3-212ENST00000564574 RFWD3Q6PCD5 774 aa21.29■■□□□ 1
CLN3-212ENST00000564574 C14orf80Q86SX3 495 aa21.29■■□□□ 1
CLN3-212ENST00000564574 RAPGEF5Q92565 580 aa21.29■■□□□ 1
CLN3-212ENST00000564574 TSC1Q92574 1164 aa21.29■■□□□ 1
CLN3-212ENST00000564574 ALG3Q92685 438 aa21.29■■□□□ 1
CLN3-212ENST00000564574 IRF7Q92985 503 aa21.29■■□□□ 1
CLN3-212ENST00000564574 TMA16Q96EY4 203 aaKnown RBP21.29■■□□□ 1
CLN3-212ENST00000564574 RPRD1AQ96P16 312 aaPredicted RBP21.29■■□□□ 1
CLN3-212ENST00000564574 RPP25Q9BUL9 199 aaKnown RBP21.29■■□□□ 1
CLN3-212ENST00000564574 MAGEB5Q9BZ81 275 aa21.29■■□□□ 1
CLN3-212ENST00000564574 SPHK2Q9NRA0 654 aa21.29■■□□□ 1
CLN3-212ENST00000564574 KLHL11Q9NVR0 708 aa21.29■■□□□ 1
CLN3-212ENST00000564574 MARK1Q9P0L2 795 aa21.29■■□□□ 1
CLN3-212ENST00000564574 STIM2Q9P246 746 aa21.29■■□□□ 1
CLN3-212ENST00000564574 FAM72CH0Y354 149 aa21.28■■□□□ 1
CLN3-212ENST00000564574 FGF10O15520 208 aaPredicted RBP21.28■■□□□ 1
CLN3-212ENST00000564574 SRGAP2O75044 1071 aa21.28■■□□□ 1
CLN3-212ENST00000564574 GDI1P31150 447 aa21.28■■□□□ 1
CLN3-212ENST00000564574 TJAP1Q5JTD0 557 aa21.28■■□□□ 1
CLN3-212ENST00000564574 FAM72AQ5TYM5 149 aa21.28■■□□□ 1
CLN3-212ENST00000564574 FAM72DQ6L9T8 149 aa21.28■■□□□ 1
CLN3-212ENST00000564574 FAM72BQ86X60 149 aa21.28■■□□□ 1
CLN3-212ENST00000564574 CPA6Q8N4T0 437 aa21.28■■□□□ 1
CLN3-212ENST00000564574 ST13P5Q8NFI4 369 aaPredicted RBP21.28■■□□□ 1
CLN3-212ENST00000564574 RSAD2Q8WXG1 361 aa21.28■■□□□ 1
CLN3-212ENST00000564574 ASIC4Q96FT7 647 aa21.28■■□□□ 1
CLN3-212ENST00000564574 PRICKLE1Q96MT3 831 aaPredicted RBP21.28■■□□□ 1
CLN3-212ENST00000564574 ASB2Q96Q27 587 aa21.28■■□□□ 1
CLN3-212ENST00000564574 WDR24Q96S15 920 aa21.28■■□□□ 1
CLN3-212ENST00000564574 NAPGQ99747 312 aaPredicted RBP21.28■■□□□ 1
CLN3-212ENST00000564574 CALN1Q9BXU9 219 aa21.28■■□□□ 1
CLN3-212ENST00000564574 ZYG11BQ9C0D3 744 aa21.28■■□□□ 1
CLN3-212ENST00000564574 CARD9Q9H257 536 aa21.28■■□□□ 1
CLN3-212ENST00000564574 CATSPERBQ9H7T0 1116 aa21.28■■□□□ 1
CLN3-212ENST00000564574 PRDM16Q9HAZ2 1276 aa21.28■■□□□ 1
CLN3-212ENST00000564574 CWC15Q9P013 229 aaKnown RBP21.28■■□□□ 1
CLN3-212ENST00000564574 MYO10Q9HD67 2058 aa21.28■■□□□ 1
CLN3-212ENST00000564574 MYOFQ9NZM1 2061 aa21.28■■□□□ 1
CLN3-212ENST00000564574 VCANP13611 3396 aa21.27■■□□□ 1
CLN3-212ENST00000564574 CTAGE9A4FU28 777 aa21.27■■□□□ 1
CLN3-212ENST00000564574 C19orf67A6NJJ6 358 aa21.27■■□□□ 1
CLN3-212ENST00000564574 C3orf70A6NLC5 250 aaPredicted RBP21.27■■□□□ 1
CLN3-212ENST00000564574 TSPAN3O60637 253 aa21.27■■□□□ 1
CLN3-212ENST00000564574 ADH1CP00326 375 aa21.27■■□□□ 1
CLN3-212ENST00000564574 GOT1P17174 413 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms