RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 ANKS1BQ7Z6G8 1248 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 C14orf80Q86SX3 495 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 RASSF3Q86WH2 238 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 ZNF677Q86XU0 584 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 KIAA2013Q8IYS2 634 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 CARNMT1Q8N4J0 409 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 ZNF366Q8N895 744 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 CCDC26Q8TAB7 109 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 JOSD2Q8TAC2 188 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 RUBCNQ92622 972 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 BTN2A3PQ96KV6 586 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 CFAP57Q96MR6 1250 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 PRMT1Q99873 361 aaKnown RBP12□□□□□ -0.49
CCDC88C-208ENST00000554165 AGPAT1Q99943 283 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 HINFPQ9BQA5 517 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 SYT11Q9BT88 431 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 SLC2A11Q9BYW1 496 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 PARD6AQ9NPB6 346 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 CD93Q9NPY3 652 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 METTL5Q9NRN9 209 aaKnown RBP12□□□□□ -0.49
CCDC88C-208ENST00000554165 SEPT11Q9NVA2 429 aaKnown RBP12□□□□□ -0.49
CCDC88C-208ENST00000554165 TAS2R14Q9NYV8 317 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 THAP10Q9P2Z0 257 aaPredicted RBP12□□□□□ -0.49
CCDC88C-208ENST00000554165 EBF1Q9UH73 591 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 GGA2Q9UJY4 613 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 INTS6Q9UL03 887 aaKnown RBP12□□□□□ -0.49
CCDC88C-208ENST00000554165 DAAM1Q9Y4D1 1078 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 STON1Q9Y6Q2 735 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 CCDC163A0A0D9SF12 145 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 PAGE1O75459 146 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 PABPC1P11940 636 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 HLA-EP13747 358 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 PTMSP20962 102 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 PRKCHP24723 683 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 GBP1P32455 592 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 PBX1P40424 430 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 ATP11AP98196 1134 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 LMAN2Q12907 356 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 ZNF234Q14588 700 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 NFKBIBQ15653 356 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 SKOR2Q2VWA4 1001 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 HSF5Q4G112 596 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 ARTNQ5T4W7 220 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 FBXL22Q6P050 247 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 NUDT18Q6ZVK8 323 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 KIAA0907Q7Z7F0 614 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 ZDHHC17Q8IUH5 632 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 PGBD3Q8N328 593 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 ATP6V0D2Q8N8Y2 350 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 HJURPQ8NCD3 748 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 KCNV2Q8TDN2 545 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 IGSF8Q969P0 613 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 NT5C3BQ969T7 300 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 GABRG3Q99928 467 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 MAGEB5Q9BZ81 275 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 TTYH3Q9C0H2 523 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 SIK2Q9H0K1 926 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 MTG2Q9H4K7 406 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 BCCIPQ9P287 314 aaKnown RBP eCLIP11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 NCDNQ9UBB6 729 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 HS3ST4Q9Y661 456 aa11.99□□□□□ -0.49
CCDC88C-208ENST00000554165 A0A1W2PQC6 194 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 TMCO5BA8MYB1 307 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 SKILP12757 684 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 FERP16591 822 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 NDUFV2P19404 249 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 ABCB4P21439 1286 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 TGM1P22735 817 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 CCR1P32246 355 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 CNR2P34972 360 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 SCNN1AP37088 669 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 CTSOP43234 321 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 CXCR3P49682 368 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 UBASH3AP57075 661 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 DEUP1Q05D60 604 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 SPEM2Q0P670 501 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 AUHQ13825 339 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 C15orf59Q2T9L4 293 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 SLC25A52Q3SY17 297 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 PLK5Q496M5 336 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 MPP7Q5T2T1 576 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 MBLAC2Q68D91 279 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 TRIM72Q6ZMU5 477 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 ZNF571Q7Z3V5 609 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 TRMT11Q7Z4G4 463 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 MFN1Q8IWA4 741 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 APCDD1Q8J025 514 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 DEFB119Q8N690 84 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 OR52K2Q8NGK3 314 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 FIBINQ8TAL6 211 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 RXFP2Q8WXD0 754 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 DDX50Q9BQ39 737 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 TKTL2Q9H0I9 626 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 DUSP15Q9H1R2 295 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 SMOC1Q9H4F8 434 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 POLMQ9NP87 494 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 ADAM22Q9P0K1 906 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms