RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 DSTYKQ6XUX3 929 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 SIX6OS1Q8N1H7 587 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 LENG1Q96BZ8 264 aaPredicted RBP13.53□□□□□ -0.24
LDLR-203ENST00000535915 PGBD4Q96DM1 585 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 C20orf27Q9GZN8 174 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 PRDM12Q9H4Q4 367 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 DCLRE1BQ9H816 532 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 SPATS2LQ9NUQ6 558 aaKnown RBP13.53□□□□□ -0.24
LDLR-203ENST00000535915 STAP1Q9ULZ2 295 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 IPPQ9Y573 584 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 E7ENQ6 273 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 LMNAP02545 664 aaKnown RBP13.53□□□□□ -0.24
LDLR-203ENST00000535915 PTPN1P18031 435 aaKnown RBP13.53□□□□□ -0.24
LDLR-203ENST00000535915 PGAM1P18669 254 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 WARSP23381 471 aaKnown RBP13.53□□□□□ -0.24
LDLR-203ENST00000535915 GLUD2P49448 558 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 NIPAL4Q0D2K0 466 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 XKR4Q5GH76 650 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 C16orf46Q6P387 395 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 PACS1Q6VY07 963 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 KYAT3Q6YP21 454 aaKnown RBP13.53□□□□□ -0.24
LDLR-203ENST00000535915 LIMS2Q7Z4I7 341 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 TOP6BLQ8N6T0 577 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 ARRDC4Q8NCT1 418 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 SH3TC2Q8TF17 1288 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 NPY6RQ99463 290 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 PRDM16Q9HAZ2 1276 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 EIF2B3Q9NR50 452 aaKnown RBP13.53□□□□□ -0.24
LDLR-203ENST00000535915 EEF2KO00418 725 aaKnown RBP13.52□□□□□ -0.24
LDLR-203ENST00000535915 TPP1O14773 563 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 SNNO75324 88 aaPredicted RBP13.52□□□□□ -0.24
LDLR-203ENST00000535915 ALDOAP04075 364 aaKnown RBP13.52□□□□□ -0.24
LDLR-203ENST00000535915 ENO1P06733 434 aaKnown RBP13.52□□□□□ -0.24
LDLR-203ENST00000535915 CPA2P48052 419 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 IFRD2Q12894 506 aaPredicted RBP13.52□□□□□ -0.24
LDLR-203ENST00000535915 HSF5Q4G112 596 aaPredicted RBP13.52□□□□□ -0.24
LDLR-203ENST00000535915 KHDC1Q4VXA5 237 aaKnown RBP13.52□□□□□ -0.24
LDLR-203ENST00000535915 ANKRD23Q86SG2 305 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 CCNJLQ8IV13 435 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 ZNF567Q8N184 647 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 SMC1BQ8NDV3 1235 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 ARNTL2Q8WYA1 636 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 RILPQ96NA2 401 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 XPNPEP3Q9NQH7 507 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 PIGVQ9NUD9 493 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 SYBUQ9NX95 663 aa13.52□□□□□ -0.24
LDLR-203ENST00000535915 HBS1LQ9Y450 684 aaKnown RBP13.52□□□□□ -0.24
LDLR-203ENST00000535915 PEX19P40855 299 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 MAP3K7CLP57077 242 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 PDE1BQ01064 536 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 WASHC5Q12768 1159 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 FASTKD1Q53R41 847 aaKnown RBP13.52□□□□□ -0.25
LDLR-203ENST00000535915 MDH1BQ5I0G3 518 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 WSCD1Q658N2 575 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 FAM91A1Q658Y4 838 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 CLEC20AQ6ZU45 233 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 HFE2Q6ZVN8 426 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 PID1Q7Z2X4 250 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 TLK2Q86UE8 772 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 TEX9Q8N6V9 391 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 MAB21L3Q8N8X9 362 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 ZNF483Q8TF39 744 aaPredicted RBP13.52□□□□□ -0.25
LDLR-203ENST00000535915 ATP2A3Q93084 1043 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 WNT8BQ93098 351 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 NT5C3BQ969T7 300 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 SPDL1Q96EA4 605 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 TSPAN18Q96SJ8 248 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 THAP1Q9NVV9 213 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 IL1RAPL1Q9NZN1 696 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 TXNDC16Q9P2K2 825 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 CLEC11AQ9Y240 323 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 PSAT1Q9Y617 370 aa13.52□□□□□ -0.25
LDLR-203ENST00000535915 CAPN9O14815 690 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 GLRA3O75311 464 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 RARBP10826 455 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 YBX3P16989 372 aaKnown RBP eCLIP13.51□□□□□ -0.253e-9■□□□□ 8.2
LDLR-203ENST00000535915 PTDSS1P48651 473 aaKnown RBP13.51□□□□□ -0.25
LDLR-203ENST00000535915 TKTL1P51854 596 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 PDE1CQ14123 709 aaPredicted RBP13.51□□□□□ -0.25
LDLR-203ENST00000535915 RCN2Q14257 317 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 N4BP2L1Q5TBK1 243 aaPredicted RBP13.51□□□□□ -0.25
LDLR-203ENST00000535915 AP1ARQ63HQ0 302 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 TWF2Q6IBS0 349 aaKnown RBP13.51□□□□□ -0.25
LDLR-203ENST00000535915 CES3Q6UWW8 571 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 RFX8Q6ZV50 586 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 PAQR9Q6ZVX9 377 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 TP53INP2Q8IXH6 220 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 SMG8Q8ND04 991 aaKnown RBP13.51□□□□□ -0.25
LDLR-203ENST00000535915 SLC7A14Q8TBB6 771 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 ADAM32Q8TC27 787 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 ACMSDQ8TDX5 336 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 NAT9Q9BTE0 207 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 ZFATQ9P243 1243 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 GNEQ9Y223 722 aaKnown RBP13.51□□□□□ -0.25
LDLR-203ENST00000535915 B2RBV5 119 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 KCNK1O00180 336 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 POLBP06746 335 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 PSEN2P49810 448 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 RABGGTBP53611 331 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 ALDH18A1P54886 795 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms