RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ZNF513Q8N8E2 541 aaPredicted RBP13.44□□□□□ -0.26
VPS28-216ENST00000533806 ATP6V0D2Q8N8Y2 350 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 SUMF1Q8NBK3 374 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 TXNDC5Q8NBS9 432 aaKnown RBP13.44□□□□□ -0.26
VPS28-216ENST00000533806 RXFP2Q8WXD0 754 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 CFAP57Q96MR6 1250 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 ACOX2Q99424 681 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 GABRG3Q99928 467 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 ZDHHC4Q9NPG8 344 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 ELOVL2Q9NXB9 296 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 SLC8A2Q9UPR5 921 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 SYNJ2BP-COX16A0A087WUM0 186 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 A0A1W2PQF6 199 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 HRO43593 1189 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 TIMM44O43615 452 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 PAGE1O75459 146 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 GJB6O95452 261 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 KRT3P12035 628 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 SKILP12757 684 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 RRM1P23921 792 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 HOXD11P31277 338 aaPredicted RBP13.43□□□□□ -0.26
VPS28-216ENST00000533806 PTPN9P43378 593 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 SULT1E1P49888 294 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 DGKEP52429 567 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 DEUP1Q05D60 604 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 KLHL30Q0D2K2 578 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 EIF4HQ15056 248 aaKnown RBP13.43□□□□□ -0.26
VPS28-216ENST00000533806 RAB6CQ53S08 254 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 FSCBQ5H9T9 825 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 SH3PXD2AQ5TCZ1 1133 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 FBXL22Q6P050 247 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 WDR59Q6PJI9 974 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 ZC3H14Q6PJT7 736 aaKnown RBP13.43□□□□□ -0.26
VPS28-216ENST00000533806 ASCL5Q7RTU5 278 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 ANKS1BQ7Z6G8 1248 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 LGI2Q8N0V4 545 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 CFAP52Q8N1V2 620 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 HJURPQ8NCD3 748 aaPredicted RBP13.43□□□□□ -0.26
VPS28-216ENST00000533806 ATRIPQ8WXE1 791 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 C1orf74Q96LT6 269 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 TKTL2Q9H0I9 626 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 RAB6CQ9H0N0 254 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 ISCUQ9H1K1 167 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 EPC1Q9H2F5 836 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 WDCPQ9H6R7 721 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 ABCB8Q9NUT2 735 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 SEPT11Q9NVA2 429 aaKnown RBP13.43□□□□□ -0.26
VPS28-216ENST00000533806 COX16Q9P0S2 106 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 THAP10Q9P2Z0 257 aaPredicted RBP13.43□□□□□ -0.26
VPS28-216ENST00000533806 SLC12A6Q9UHW9 1150 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 LUC7L2Q9Y383 392 aaKnown RBP13.43□□□□□ -0.26
VPS28-216ENST00000533806 HS3ST4Q9Y661 456 aa13.43□□□□□ -0.26
VPS28-216ENST00000533806 BZW2Q9Y6E2 419 aaKnown RBP13.43□□□□□ -0.26
VPS28-216ENST00000533806 DRGXA6NNA5 263 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 NPC1O15118 1278 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 CBFA2T2O43439 604 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 APBB3O95704 486 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 PDGFRAP16234 1089 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 NTSR1P30989 418 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 CASP14P31944 242 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 CD70P32970 193 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 CNR2P34972 360 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 PXNP49023 591 aaPredicted RBP13.42□□□□□ -0.26
VPS28-216ENST00000533806 MAMLD1Q13495 774 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 AUHQ13825 339 aaKnown RBP13.42□□□□□ -0.26
VPS28-216ENST00000533806 EOGTQ5NDL2 527 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 SPECC1LQ69YQ0 1117 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 PLEKHA7Q6IQ23 1121 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 PPP1R2P3Q6NXS1 205 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 SARM1Q6SZW1 724 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 TRMT11Q7Z4G4 463 aaKnown RBP13.42□□□□□ -0.26
VPS28-216ENST00000533806 C14orf80Q86SX3 495 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 CHSY1Q86X52 802 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 VSTM4Q8IW00 320 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 DRC7Q8IY82 874 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 CPLX3Q8WVH0 158 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 RNF34Q969K3 372 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 IGSF8Q969P0 613 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 HHIPQ96QV1 700 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 DNAJC7Q99615 494 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 TMPRSS4Q9NRS4 437 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 GGA2Q9UJY4 613 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 INTS6Q9UL03 887 aaKnown RBP13.42□□□□□ -0.26
VPS28-216ENST00000533806 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.42□□□□□ -0.268e-7■■□□□ 13.6
VPS28-216ENST00000533806 FANCMQ8IYD8 2048 aa13.42□□□□□ -0.26
VPS28-216ENST00000533806 RIF1Q5UIP0 2472 aaKnown RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 IGLV3-10A0A075B6K4 115 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 PRR23AA6NEV1 266 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 WASH3PC4AMC7 463 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 F5H5T6 163 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 RTN2O75298 545 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 LUC7L3O95232 432 aaKnown RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 FTLP02792 175 aaPredicted RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 SERPING1P05155 500 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 TPM3P06753 285 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 C7P10643 843 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 PABPC1P11940 636 aaKnown RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 RDXP35241 583 aaKnown RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 MRE11P49959 708 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 IRAK1P51617 712 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms