RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	TP53BP2	Q13625	1128 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	NFE2L1	Q14494	772 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	IL23R	Q5VWK5	629 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	FAM160B1	Q5W0V3	765 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	FIP1L1	Q6UN15	594 aa	Known RBP	5.94	□□□□□ -1.46
CD44-231	ENST00000531110		Q6YL49	198 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	DGLUCY	Q7Z3D6	616 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	MRPL10	Q7Z7H8	261 aa	Known RBP	5.94	□□□□□ -1.46
CD44-231	ENST00000531110	PHLDB2	Q86SQ0	1253 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	USP37	Q86T82	979 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	DGKH	Q86XP1	1220 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	TNIP2	Q8NFZ5	429 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	ANKS1A	Q92625	1134 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	EFHD2	Q96C19	240 aa	Predicted RBP	5.94	□□□□□ -1.46
CD44-231	ENST00000531110	SUCLG2	Q96I99	432 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	C1orf74	Q96LT6	269 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	NR1H4	Q96RI1	486 aa	Predicted RBP	5.94	□□□□□ -1.46
CD44-231	ENST00000531110	BPIFA3	Q9BQP9	254 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	WDR11	Q9BZH6	1224 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	ABCG4	Q9H172	646 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	TOR3A	Q9H497	397 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	SMARCAD1	Q9H4L7	1026 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	GPR108	Q9NPR9	543 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	SLAMF7	Q9NQ25	335 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	INTS13	Q9NVM9	706 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	RAB21	Q9UL25	225 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	EXOC6B	Q9Y2D4	811 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	COL4A3	Q01955	1670 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	MAST3	O60307	1309 aa		5.94	□□□□□ -1.46
CD44-231	ENST00000531110	SYNJ1	O43426	1573 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110		A0A1W2PPL8	197 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	ISM1	B1AKI9	464 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	ORC4	O43929	436 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	ZFPL1	O95159	310 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	BAG3	O95817	575 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	ZFY	P08048	801 aa	Predicted RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	TOP1	P11387	765 aa	Known RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	PC	P11498	1178 aa	Known RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	POR	P16435	677 aa	Predicted RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	HSPA4	P34932	840 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	MLH1	P40692	756 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	VIPR2	P41587	438 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	RARS	P54136	660 aa	Known RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	USP14	P54578	494 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	GSDMD	P57764	484 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	EXOSC9	Q06265	439 aa	Known RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	DMPK	Q09013	629 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	GRSF1	Q12849	480 aa	Known RBP eCLIP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	IDI1	Q13907	227 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	WDR43	Q15061	677 aa	Known RBP eCLIP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	PPP2R5B	Q15173	497 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	TPD52L1	Q16890	204 aa	Predicted RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	CRB2	Q5IJ48	1285 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	ARMC3	Q5W041	872 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	TWF2	Q6IBS0	349 aa	Known RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	CYB5RL	Q6IPT4	315 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	CCDC121	Q6ZUS5	278 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	INTS8	Q75QN2	995 aa	Known RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	GPR149	Q86SP6	731 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	LDLRAD3	Q86YD5	345 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	LCORL	Q8N3X6	602 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	TRIML2	Q8N7C3	387 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	TEX19	Q8NA77	164 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	DQX1	Q8TE96	717 aa	Known RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	DYDC1	Q8WWB3	177 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	NEU4	Q8WWR8	484 aa	Predicted RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	ATL1	Q8WXF7	558 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	ASB10	Q8WXI3	467 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	TTC17	Q96AE7	1141 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	GIMAP5	Q96F15	307 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	ABHD8	Q96I13	439 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	CEP19	Q96LK0	163 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	JAKMIP1	Q96N16	626 aa	Known RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	SORCS2	Q96PQ0	1159 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	HEPH	Q9BQS7	1158 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	TRIM54	Q9BYV2	358 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	TMPRSS5	Q9H3S3	457 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	CLIC5	Q9NZA1	410 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	VSX1	Q9NZR4	365 aa	Predicted RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	ANKFY1	Q9P2R3	1169 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	SUCLA2	Q9P2R7	463 aa	Predicted RBP	5.93	□□□□□ -1.46
CD44-231	ENST00000531110	PYCARD	Q9ULZ3	195 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	DMTF1	Q9Y222	760 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	C15orf41	Q9Y2V0	281 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	TIMM22	Q9Y584	194 aa		5.93	□□□□□ -1.46
CD44-231	ENST00000531110	SPATA31E1	Q6ZUB1	1445 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	KIF21A	Q7Z4S6	1674 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	TRGV11	A0A075B6L2	103 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	LINC00854	A0A1B0GVQ3	168 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SYCE3	A1L190	88 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	UNC119B	A6NIH7	251 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110		H0Y3Z8	333 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	KMO	O15229	486 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SPTLC2	O15270	562 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	FOXN1	O15353	648 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	ASAP2	O43150	1006 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	AKAP8	O43823	692 aa	Known RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	NMT2	O60551	498 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	RNASEH2A	O75792	299 aa	Known RBP	5.92	□□□□□ -1.46

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