RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	CAMK2G	Q13555	558 aa	Predicted RBP	12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	STIL	Q15468	1287 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	TAF5	Q15542	800 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	FSCB	Q5H9T9	825 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	MBLAC2	Q68D91	279 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	FAM124A	Q86V42	546 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	UCMA	Q8WVF2	138 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	SIPA1	Q96FS4	1042 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	SLC4A5	Q9BY07	1137 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	SIX2	Q9NPC8	291 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	STIM2	Q9P246	746 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	KIAA1468	Q9P260	1216 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	RWDD2A	Q9UIY3	292 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	APC2	O95996	2303 aa		12.1	□□□□□ -0.47
VTI1A-208	ENST00000494728	ARHGAP33	O14559	1287 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	THAP12	O43422	761 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	SYNCRIP	O60506	623 aa	Known RBP	12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	NDUFS2	O75306	463 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	FBXO21	O94952	628 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	MOCS2	O96007	188 aa	Predicted RBP	12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	IGLV3-25	P01717	112 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	CEACAM1	P13688	526 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	CD59	P13987	128 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	GNA15	P30679	374 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	ACSL1	P33121	698 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	DPP6	P42658	865 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	GFPT1	Q06210	699 aa	Predicted RBP	12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	PDCL	Q13371	301 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	ST3GAL2	Q16842	350 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	ARHGAP44	Q17R89	818 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	FNDC3B	Q53EP0	1204 aa	Known RBP	12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	NUGGC	Q68CJ6	796 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	PASD1	Q8IV76	773 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	MFN1	Q8IWA4	741 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	RGL4	Q8IZJ4	473 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	AHI1	Q8N157	1196 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	CFAP52	Q8N1V2	620 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	WDTC1	Q8N5D0	677 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	OR2T3	Q8NH03	318 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	WFIKKN2	Q8TEU8	576 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	ZNF606	Q8WXB4	792 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	DNASE2B	Q8WZ79	361 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	PRCC	Q92733	491 aa	Predicted RBP	12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	FAM149B1	Q96BN6	582 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	MRGPRX3	Q96LB0	322 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	CAMK1G	Q96NX5	476 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	CPXM1	Q96SM3	734 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	C6orf106	Q9H6K1	298 aa	Predicted RBP	12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	PRSS16	Q9NQE7	514 aa		12.09	□□□□□ -0.47
VTI1A-208	ENST00000494728	FAM170A	A1A519	330 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	MEI4	A8MW99	385 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	C1QTNF9B	B2RNN3	333 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	ZBTB24	O43167	697 aa	Predicted RBP	12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	IRAK2	O43187	625 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	DLD	P09622	509 aa	Known RBP	12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	C1QTNF9	P0C862	333 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	C7	P10643	843 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	CTSO	P43234	321 aa	Predicted RBP	12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	IRAK1	P51617	712 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	ZNF445	P59923	1031 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	UBE2H	P62256	183 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	RPS14	P62263	151 aa	Known RBP	12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	EIF4EBP2	Q13542	120 aa	Predicted RBP	12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	PLEKHG6	Q3KR16	790 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	DPCR1	Q3MIW9	517 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	DCAF6	Q58WW2	860 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	ZC3H12A	Q5D1E8	599 aa	Known RBP	12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	MS4A13	Q5J8X5	152 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	DCAF12L1	Q5VU92	463 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	OTUD1	Q5VV17	481 aa	Predicted RBP	12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	RAP1GAP2	Q684P5	730 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	DPY19L2P1	Q6NXN4	242 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	LAYN	Q6UX15	382 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	CIR1	Q86X95	450 aa	Predicted RBP	12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	HJURP	Q8NCD3	748 aa	Predicted RBP	12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	C1orf216	Q8TAB5	229 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	CEP76	Q8TAP6	659 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	SHC3	Q92529	594 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	SERPINB11	Q96P15	392 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	ADAM33	Q9BZ11	813 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	LHX5	Q9H2C1	402 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	IL21R	Q9HBE5	538 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	DNAAF2	Q9NVR5	837 aa	Known RBP	12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	APEX2	Q9UBZ4	518 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	SERGEF	Q9UGK8	458 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	TLR6	Q9Y2C9	796 aa		12.08	□□□□□ -0.48
VTI1A-208	ENST00000494728	IGSF10	Q6WRI0	2623 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	HYAL3	O43820	417 aa	Predicted RBP	12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	TRUB2	O95900	331 aa	Known RBP	12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	PON1	P27169	355 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	GGCX	P38435	758 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	CSK	P41240	450 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	SLC11A2	P49281	568 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	ARID5A	Q03989	594 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	ACACA	Q13085	2346 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	NNT	Q13423	1086 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	MEA1	Q16626	185 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	HSP90AA4P	Q58FG1	418 aa		12.07	□□□□□ -0.48
VTI1A-208	ENST00000494728	MPP7	Q5T2T1	576 aa		12.07	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms