RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 TBC1D7Q9P0N9 293 aa4.39□□□□□ -1.71
VPS41-212ENST00000482217 ZDHHC8Q9ULC8 765 aa4.39□□□□□ -1.71
VPS41-212ENST00000482217 RIMKLBQ9ULI2 386 aa4.39□□□□□ -1.71
VPS41-212ENST00000482217 TMED5Q9Y3A6 229 aa4.39□□□□□ -1.71
VPS41-212ENST00000482217 DTNAQ9Y4J8 743 aa4.39□□□□□ -1.71
VPS41-212ENST00000482217 PAXBP1Q9Y5B6 917 aa4.39□□□□□ -1.71
VPS41-212ENST00000482217 PSAT1Q9Y617 370 aa4.39□□□□□ -1.71
VPS41-212ENST00000482217 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 A4D1N5 150 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 CTAGE9A4FU28 777 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 C1QTNF3-AMACRE9PGA6 284 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 GTPBP1O00178 669 aaKnown RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 CYP27B1O15528 508 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 PHGDHO43175 533 aaKnown RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 CEP104O60308 925 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 NMT2O60551 498 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 SLC43A1O75387 559 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 KRT38O76015 456 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 TRIM16O95361 564 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 OLFM2O95897 454 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 AFPP02771 609 aaKnown RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 ANXA1P04083 346 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 GNAI3P08754 354 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 FGFR2P21802 821 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 HSD17B2P37059 387 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 IL15P40933 162 aaPredicted RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 PSMC4P43686 418 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 PIK3CGP48736 1102 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 STARD6P59095 220 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 GNAI1P63096 354 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 ARHGAP8P85298 464 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 DEUP1Q05D60 604 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 STK4Q13043 487 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 CHAF1BQ13112 559 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 UBXN2BQ14CS0 331 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 IMMTQ16891 758 aaKnown RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 ZXDCQ2QGD7 858 aaPredicted RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 SUPT20HL1Q3ZLR7 823 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 HS1BP3Q53T59 392 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 STXBP5Q5T5C0 1151 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 EMC10Q5UCC4 262 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 NAIF1Q69YI7 327 aaPredicted RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 ZNF529Q6P280 563 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 TRAT1Q6PIZ9 186 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 MAMDC4Q6UXC1 1216 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 HTR3DQ70Z44 454 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 H1FNTQ75WM6 255 aaPredicted RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 GSPT2Q8IYD1 628 aaKnown RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 AFAP1Q8N556 730 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 SH2D3CQ8N5H7 860 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 AOPEPQ8N6M6 819 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 SPERTQ8NA61 448 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 FAM71BQ8TC56 605 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 CSGALNACT1Q8TDX6 532 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 NOC3LQ8WTT2 800 aaKnown RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 TBC1D22AQ8WUA7 517 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.38□□□□□ -1.71
VPS41-212ENST00000482217 ANKS1AQ92625 1134 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 DVL3Q92997 716 aaPredicted RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 VPS33AQ96AX1 596 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 GIMAP5Q96F15 307 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 TWNKQ96RR1 684 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 MYOCQ99972 504 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 PACSIN1Q9BY11 444 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 NT5C3AQ9H0P0 336 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 MRPL46Q9H2W6 279 aaKnown RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 DNAJC18Q9H819 358 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 COPS7BQ9H9Q2 264 aaPredicted RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 ZNF287Q9HBT7 754 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 PDE11AQ9HCR9 933 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 NRIP3Q9NQ35 241 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 CNNM1Q9NRU3 951 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 SNTG1Q9NSN8 517 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 JKAMPQ9P055 326 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 CPNE7Q9UBL6 633 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 UBA2Q9UBT2 640 aaPredicted RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 FETUBQ9UGM5 382 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 MAN2B2Q9Y2E5 1009 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 USP15Q9Y4E8 981 aaPredicted RBP4.38□□□□□ -1.71
VPS41-212ENST00000482217 PNPLA7Q6ZV29 1317 aa4.38□□□□□ -1.71
VPS41-212ENST00000482217 KIAA1217Q5T5P2 1943 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 A0A0G2JPF8 293 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 TCRBV7S2A1N4TA0A589 114 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 CCDC169A6NNP5 214 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 CAPN14A8MX76 684 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 HNRNPCL3B7ZW38 293 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 PTGES3LE9PB15 166 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 VWA5AO00534 786 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 IKBKBO14920 756 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 KIAA0391O15091 583 aaKnown RBP4.37□□□□□ -1.71
VPS41-212ENST00000482217 VILLO15195 856 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 ZNF623O75123 536 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 HAUS5O94927 633 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 SCGB1D1O95968 90 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 OPN1MWP04001 364 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 HNRNPCL4P0DMR1 293 aa4.37□□□□□ -1.71
VPS41-212ENST00000482217 TMIGD3P0DMS9 266 aaPredicted RBP4.37□□□□□ -1.71
VPS41-212ENST00000482217 HSPA1AP0DMV8 641 aaKnown RBP4.37□□□□□ -1.71
VPS41-212ENST00000482217 HSPA1BP0DMV9 641 aaKnown RBP4.37□□□□□ -1.71
VPS41-212ENST00000482217 OPN1MW2P0DN77 364 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms