RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SYCP2LQ5T4T6 812 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 SYPL2Q5VXT5 272 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 MBLAC2Q68D91 279 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 BEND5Q7L4P6 421 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 TAC4Q86UU9 113 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 RGL4Q8IZJ4 473 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 CADM4Q8NFZ8 388 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 OR2T3Q8NH03 318 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 STK32AQ8WU08 396 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 ZNF606Q8WXB4 792 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 DNASE2BQ8WZ79 361 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 FAM149B1Q96BN6 582 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 SUSD2Q9UGT4 822 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 PLA2G4CQ9UP65 541 aa19.52■□□□□ 0.72
CCDC88B-206ENST00000473405 TP53BP1Q12888 1972 aaPredicted RBP19.52■□□□□ 0.71
CCDC88B-206ENST00000473405 PKD1L2Q7Z442 2459 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 MEI4A8MW99 385 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 SART1O43290 800 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 KRT37O76014 449 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 DLDP09622 509 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 GNA15P30679 374 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 ACADSBP45954 432 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 ATXN3P54252 364 aaPredicted RBP19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 PLEKHG6Q3KR16 790 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 WDR45BQ5MNZ6 344 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 ENOSF1Q7L5Y1 443 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 TMEM110Q86TL2 294 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 HJURPQ8NCD3 748 aaPredicted RBP19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 NUCKS1Q9H1E3 243 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 DNAAF2Q9NVR5 837 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 TJP2Q9UDY2 1190 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 KNL1Q8NG31 2342 aa19.51■□□□□ 0.71
CCDC88B-206ENST00000473405 TMEM131Q92545 1883 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 THAP12O43422 761 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 MED7O43513 233 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 OPHN1O60890 802 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 GJB3O75712 270 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 TOP3BO95985 862 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 IGLV3-25P01717 112 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 SYPP08247 313 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 ACADMP11310 421 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 SLC9A1P19634 815 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 OXTRP30559 389 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 RPS24P62847 133 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 FOXC1Q12948 553 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 PDCLQ13371 301 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 MFN1Q8IWA4 741 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 ZCCHC9Q8N567 271 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 FIBINQ8TAL6 211 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 MYO19Q96H55 970 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 NUP58Q9BVL2 599 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 PRSS16Q9NQE7 514 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 STIM2Q9P246 746 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 APEX2Q9UBZ4 518 aa19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 XPO7Q9UIA9 1087 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 INTS6Q9UL03 887 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-206ENST00000473405 ZFYVE26Q68DK2 2539 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 MOCS2O96007 188 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 CD59P13987 128 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 GNSP15586 552 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 PITX1P78337 314 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 GRIK2Q13002 908 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 MS4A13Q5J8X5 152 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 DCAF12L1Q5VU92 463 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 FAM124AQ86V42 546 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 HDDC3Q8N4P3 179 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 SHC3Q92529 594 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 TRIM62Q9BVG3 475 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 LHX5Q9H2C1 402 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 SLC32A1Q9H598 525 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 POPDC2Q9HBU9 364 aa19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 AJAP1Q9UKB5 411 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-206ENST00000473405 A0A1B0GTW7 788 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 SPAARA0A1B0GVQ0 90 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 GTPBP10A4D1E9 387 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 METTL12A8MUP2 240 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 ATP5BP06576 529 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 POLR2EP19388 210 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 SPINK2P20155 84 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 PON1P27169 355 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 ACSL1P33121 698 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 YWHAZP63104 245 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 EIF4EBP2Q13542 120 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 TAF5Q15542 800 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 ARHGAP44Q17R89 818 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 FSCBQ5H9T9 825 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 GBP6Q6ZN66 633 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 MMS22LQ6ZRQ5 1243 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 CFAP52Q8N1V2 620 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 WDTC1Q8N5D0 677 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 ZNF557Q8N988 423 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 C1orf216Q8TAB5 229 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 TTC17Q96AE7 1141 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 FAM81BQ96LP2 452 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 CPXM1Q96SM3 734 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 DDX50Q9BQ39 737 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 FBRSQ9HAH7 460 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 SIX2Q9NPC8 291 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 SLCO1B1Q9Y6L6 691 aa19.48■□□□□ 0.71
CCDC88B-206ENST00000473405 PLXNA2O75051 1894 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms