RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 AGMOQ6ZNB7 445 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 PCGF5Q86SE9 256 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ARID3BQ8IVW6 561 aaPredicted RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 ATAD1Q8NBU5 361 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 PPP1R14CQ8TAE6 165 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 SPDL1Q96EA4 605 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 SMIM14Q96QK8 99 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 SYT15Q9BQS2 421 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 TKTL2Q9H0I9 626 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 KDM4CQ9H3R0 1056 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 FAM124BQ9H5Z6 455 aaPredicted RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 PLAC1Q9HBJ0 212 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 FAM105AQ9NUU6 356 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 NKX1-2Q9UD57 310 aaPredicted RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 DNAJB4Q9UDY4 337 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 SHOC2Q9UQ13 582 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 CHKBQ9Y259 395 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ANKRD12Q6UB98 2062 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ZNF638Q14966 1978 aaKnown RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 LOC100653049A0A140TA62 436 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 KRT34O76011 436 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ASMTLO95671 621 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 RPL17P18621 184 aaKnown RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 SERPINB3P29508 390 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 MSX2P35548 267 aaPredicted RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 SOX11P35716 441 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 GRIK1P39086 918 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ALDH18A1P54886 795 aaKnown RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 POU6F1Q14863 301 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 LACTB2Q53H82 288 aaPredicted RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 HSP90AA5PQ58FG0 334 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ANKRD20A2Q5SQ80 823 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ANKRD20A1Q5TYW2 823 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ANKRD20A3Q5VUR7 823 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 RPAINQ86UA6 219 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 VPS52Q8N1B4 723 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 TTC39CQ8N584 583 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ANKRD52Q8NB46 1076 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ZMIZ2Q8NF64 920 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 RNF139Q8WU17 664 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 DCAKDQ8WVC6 231 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 RILPQ96NA2 401 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 YIPF3Q9GZM5 350 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ARHGEF4Q9NR80 690 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 CHRAC1Q9NRG0 131 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 SYBUQ9NX95 663 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 HEY2Q9UBP5 337 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 KIAA1257Q9ULG3 409 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ZSWIM8A7E2V4 1837 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 M0QZ92 97 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 EEF2KO00418 725 aaKnown RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 COPEO14579 308 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 ENTPD5O75356 428 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 SORBS2O94875 1100 aaKnown RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 FYNP06241 537 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 THP07101 528 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 NQO1P15559 274 aaKnown RBP8.62□□□□□ -1.03
CD44-208ENST00000428726 GABRB2P47870 512 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 PDE1BQ01064 536 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 XRCC4Q13426 336 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 PTPRCAPQ14761 206 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 PTPRRQ15256 657 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 CHI3L2Q15782 390 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 TAZQ16635 292 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 NT5DC4Q86YG4 428 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 TTC8Q8TAM2 541 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 KLHL5Q96PQ7 755 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 EBF4Q9BQW3 602 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 PPCSQ9HAB8 311 aa8.62□□□□□ -1.03
CD44-208ENST00000428726 RBM47A0AV96 593 aaKnown RBP8.61□□□□□ -1.03
CD44-208ENST00000428726 ZBTB24O43167 697 aaPredicted RBP8.61□□□□□ -1.03
CD44-208ENST00000428726 FAM200BP0CF97 657 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 TSPAN8P19075 237 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 BCAT1P54687 386 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 INCA1Q0VD86 236 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 RFWD3Q6PCD5 774 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 TMEM110Q86TL2 294 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 OR10T2Q8NGX3 314 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 MYLPFQ96A32 169 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 MARK4Q96L34 752 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 SRPK1Q96SB4 655 aaKnown RBP8.61□□□□□ -1.03
CD44-208ENST00000428726 SLC4A5Q9BY07 1137 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 RNF186Q9NXI6 227 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 EURLQ9NYK6 297 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 RPS6KL1Q9Y6S9 549 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 GON4LQ3T8J9 2241 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 GOLGA8QA0A0J9YX86 632 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 GOLGA8OA6NCC3 632 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 SLC15A5A6NIM6 579 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 GOLGA8NF8WBI6 632 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 PIRO00625 290 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 NEMP1O14524 444 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 PHGDHO43175 533 aaKnown RBP8.61□□□□□ -1.03
CD44-208ENST00000428726 ITM2AO43736 263 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 MGRN1O60291 552 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 STAU1O95793 577 aaKnown RBP8.61□□□□□ -1.03
CD44-208ENST00000428726 PRKAR2AP13861 404 aaKnown RBP8.61□□□□□ -1.03
CD44-208ENST00000428726 NPR3P17342 541 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 HDCP19113 662 aa8.61□□□□□ -1.03
CD44-208ENST00000428726 IRF9Q00978 393 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms