RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 DLDP09622 509 aaKnown RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 RPL13P26373 211 aaKnown RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 CD27P26842 260 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 GTF2H1P32780 548 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 PI4KAP42356 2102 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 PRCPP42785 496 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 CTSKP43235 329 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 BCAT1P54687 386 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 DAOAP59103 153 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 MCCD1P59942 119 aaPredicted RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 RPS24P62847 133 aaKnown RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 BST2Q10589 180 aaKnown RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 DNAJC3Q13217 504 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 PNOCQ13519 176 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 CUL2Q13617 745 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 SHBQ15464 509 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 PKDCCQ504Y2 493 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 SGO2Q562F6 1265 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 FAM133BQ5BKY9 247 aaKnown RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 ADGRF1Q5T601 910 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 PIK3R6Q5UE93 754 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 ANKRD40Q6AI12 368 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 PMF1Q6P1K2 205 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 ADAT2Q7Z6V5 191 aaKnown RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 HSCBQ8IWL3 235 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 DHX40Q8IX18 779 aaKnown RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 AHI1Q8N157 1196 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 UBR7Q8N806 425 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.43□□□□□ -1.06
VIM-202ENST00000421459 PRICKLE1Q96MT3 831 aaPredicted RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 DCBLD2Q96PD2 775 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 CDC6Q99741 560 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 MIS12Q9H081 205 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 NEUROG2Q9H2A3 272 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 CAAP1Q9H8G2 361 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 HESX1Q9UBX0 185 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 USP25Q9UHP3 1055 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 XPO7Q9UIA9 1087 aaKnown RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 STOML2Q9UJZ1 356 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 HBS1LQ9Y450 684 aaKnown RBP8.43□□□□□ -1.06
VIM-202ENST00000421459 PCDHGB2Q9Y5G2 931 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 ADAMTS20P59510 1910 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 FAM237AA0A1B0GTK4 181 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 A0A1W2PP55 124 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 TRIM49BA6NDI0 452 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 CETN3O15182 167 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 MID1O15344 667 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 TNFSF14O43557 240 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 ACSL4O60488 711 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 ZNF202O95125 648 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 MYL1P05976 194 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 FYNP06241 537 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 EPB41P11171 864 aaKnown RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 POLR2EP19388 210 aaKnown RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 BRD2P25440 801 aaKnown RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 ITPKBP27987 946 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 CSKP41240 450 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 GRIA4P48058 902 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 METAP1P53582 386 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 GALCP54803 685 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 SLC8A3P57103 927 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 BNIP3Q12983 259 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 KCNJ12Q14500 433 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 SUZ12Q15022 739 aaKnown RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 TEAD4Q15561 434 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 SMAD1Q15797 465 aaKnown RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 ZNF776Q68DI1 518 aaPredicted RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 KIAA0895LQ68EN5 471 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 ISM2Q6H9L7 571 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 NCEH1Q6PIU2 408 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 MMAAQ8IVH4 418 aaKnown RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 MFN1Q8IWA4 741 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 SIX6OS1Q8N1H7 587 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 CARNMT1Q8N4J0 409 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 ADAM32Q8TC27 787 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 WFIKKN2Q8TEU8 576 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 SLC35F5Q8WV83 523 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 IGSF8Q969P0 613 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 CCDC47Q96A33 483 aaKnown RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 MRGPRX3Q96LB0 322 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 DNAI2Q9GZS0 605 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 NUCKS1Q9H1E3 243 aaKnown RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 RSPH9Q9H1X1 276 aaPredicted RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 PABPC3Q9H361 631 aaKnown RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 ABCC13Q9NSE7 274 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 OLA1Q9NTK5 396 aaKnown RBP8.42□□□□□ -1.06
VIM-202ENST00000421459 FBXL12Q9NXK8 326 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 SLCO3A1Q9UIG8 710 aa8.42□□□□□ -1.06
VIM-202ENST00000421459 A0A1B0GTQ1 180 aa8.41□□□□□ -1.06
VIM-202ENST00000421459 RNASEH2AO75792 299 aaKnown RBP8.41□□□□□ -1.06
VIM-202ENST00000421459 MOCS2O96007 188 aaPredicted RBP8.41□□□□□ -1.06
VIM-202ENST00000421459 IGLV3-27P01718 113 aa8.41□□□□□ -1.06
VIM-202ENST00000421459 LTFP02788 710 aa8.41□□□□□ -1.06
VIM-202ENST00000421459 ATP5BP06576 529 aaKnown RBP8.41□□□□□ -1.06
VIM-202ENST00000421459 C7P10643 843 aa8.41□□□□□ -1.06
VIM-202ENST00000421459 VDRP11473 427 aa8.41□□□□□ -1.06
VIM-202ENST00000421459 VAV1P15498 845 aa8.41□□□□□ -1.06
VIM-202ENST00000421459 GRK6P43250 576 aa8.41□□□□□ -1.06
VIM-202ENST00000421459 STK19P49842 368 aaPredicted RBP8.41□□□□□ -1.06
VIM-202ENST00000421459 CCT8P50990 548 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms