RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MGAMO43451 1857 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 LCTP09848 1927 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 TRIP12Q14669 1992 aaPredicted RBP13.77□□□□□ -0.21
VPS54-203ENST00000409558 PRR5-ARHGAP8B1AHC4 643 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 CCL22O00626 93 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 SCAMP3O14828 347 aaKnown RBP13.77□□□□□ -0.21
VPS54-203ENST00000409558 PMPCBO75439 489 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 FAM200BP0CF97 657 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 PSEN2P49810 448 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 ARHGAP8P85298 464 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 NXNQ6DKJ4 435 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 RNF148Q8N7C7 305 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 IPMKQ8NFU5 416 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 MZB1Q8WU39 189 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 RRAGCQ9HB90 399 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 CHRAC1Q9NRG0 131 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 C15orf41Q9Y2V0 281 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 E9PBE3 544 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 KLHL41O60662 606 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 RFPL1O75677 317 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 TGM2P21980 687 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 SLC25A3Q00325 362 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 CFAP157Q5JU67 520 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 TREML1Q86YW5 311 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 SMC1BQ8NDV3 1235 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 PCED1BQ96HM7 432 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 MS4A4AQ96JQ5 239 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 SLC39A10Q9ULF5 831 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 NOD1Q9Y239 953 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 MT-CYBP00156 380 aaPredicted RBP13.76□□□□□ -0.21
VPS54-203ENST00000409558 SARNPP82979 210 aaKnown RBP13.76□□□□□ -0.21
VPS54-203ENST00000409558 IRF9Q00978 393 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 C10orf107Q8IVU9 208 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 C3orf58Q8NDZ4 430 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 TKTL2Q9H0I9 626 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 TSPYL2Q9H2G4 693 aaPredicted RBP13.76□□□□□ -0.21
VPS54-203ENST00000409558 XPNPEP3Q9NQH7 507 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 E7ESA3 106 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 TM9SF1O15321 606 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 ZBTB24O43167 697 aaPredicted RBP13.76□□□□□ -0.21
VPS54-203ENST00000409558 USP1O94782 785 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 PTPN7P35236 360 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 STILQ15468 1287 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 NOMO2Q5JPE7 1267 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 ARHGAP36Q6ZRI8 547 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 ZNF534Q76KX8 674 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 STRA8Q7Z7C7 330 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 ACVR1CQ8NER5 493 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 PPP4R1Q8TF05 950 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 ZNF670Q9BS34 389 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 IARS2Q9NSE4 1012 aaKnown RBP13.76□□□□□ -0.21
VPS54-203ENST00000409558 C20orf96Q9NUD7 363 aaPredicted RBP13.76□□□□□ -0.21
VPS54-203ENST00000409558 EFR3BQ9Y2G0 817 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 PLLPQ9Y342 182 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 BUD23O43709 281 aaKnown RBP13.76□□□□□ -0.21
VPS54-203ENST00000409558 NPR3P17342 541 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 MATKP42679 507 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 ZNF157P51786 506 aaPredicted RBP13.76□□□□□ -0.21
VPS54-203ENST00000409558 MCCD1P59942 119 aaPredicted RBP13.76□□□□□ -0.21
VPS54-203ENST00000409558 CLEC20AQ6ZU45 233 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 TFAP2DQ7Z6R9 452 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 CDKL2Q92772 493 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 NSL1Q96IY1 281 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 ZNF560Q96MR9 790 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 ZNF570Q96NI8 536 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 ST3GAL5Q9UNP4 418 aa13.76□□□□□ -0.21
VPS54-203ENST00000409558 HMX2A2RU54 273 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 M0QZ92 97 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 FAM187BQ17R55 369 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 ASRGL1Q7L266 308 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 SNX31Q8N9S9 440 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 MYCBPQ99417 103 aaPredicted RBP13.75□□□□□ -0.21
VPS54-203ENST00000409558 SYT15Q9BQS2 421 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 PLEKHA5Q9HAU0 1116 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 TAS2R1Q9NYW7 299 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 TMEM216Q9P0N5 145 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 PRG3Q9Y2Y8 225 aaPredicted RBP13.75□□□□□ -0.21
VPS54-203ENST00000409558 SDR42E2A6NKP2 422 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 TNPO2O14787 897 aaKnown RBP13.75□□□□□ -0.21
VPS54-203ENST00000409558 THPOP40225 353 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 SLC9A4Q6AI14 798 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 OMDQ99983 421 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 KIAA1257Q9ULG3 409 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 STAP1Q9ULZ2 295 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 CDY2AQ9Y6F7 541 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 WASF2Q9Y6W5 498 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 A0A0A0MRY4 1105 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 C17orf102A2RUQ5 167 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 DCAF8L1A6NGE4 600 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 C2CD2LO14523 706 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 SNX16P57768 344 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 CDK16Q00536 496 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 USP50Q70EL3 339 aaPredicted RBP13.75□□□□□ -0.21
VPS54-203ENST00000409558 SLC26A9Q7LBE3 791 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 PLD6Q8N2A8 252 aaKnown RBP13.75□□□□□ -0.21
VPS54-203ENST00000409558 NPWQ8N729 165 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 C2orf69Q8N8R5 385 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 WNT8BQ93098 351 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 SPATA13Q96N96 652 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 WDCPQ9H6R7 721 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms