RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ERVK-5Q9HDB9 667 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 CRLS1Q9UJA2 301 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 GOLGA4Q13439 2230 aaKnown RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 PAGE1O75459 146 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 STBD1O95210 358 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 KITP10721 976 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 GFAPP14136 432 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 ELK3P41970 407 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 ASTE1Q2TB18 679 aaPredicted RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 MMEL1Q495T6 779 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 PTRHD1Q6GMV3 140 aaKnown RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 TTC23LQ6PF05 361 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 CACUL1Q86Y37 369 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 FUKQ8N0W3 1084 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 CDC26Q8NHZ8 85 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 AGR3Q8TD06 166 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 EPS8L3Q8TE67 593 aaKnown RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 TGS1Q96RS0 853 aaKnown RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 ZYG11BQ9C0D3 744 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 HACD3Q9P035 362 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 UBA2Q9UBT2 640 aaPredicted RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 C2orf81A6NN90 581 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 FSCN2O14926 492 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 LIASO43766 372 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 CHEK2O96017 543 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 NCF2P19878 526 aaPredicted RBP9.33□□□□□ -0.92
LIG4-202ENST00000405925 HSPA9P38646 679 aaKnown RBP9.33□□□□□ -0.92
LIG4-202ENST00000405925 SLC11A1P49279 550 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 SOX4Q06945 474 aaPredicted RBP9.33□□□□□ -0.92
LIG4-202ENST00000405925 PKN2Q16513 984 aaKnown RBP9.33□□□□□ -0.92
LIG4-202ENST00000405925 OSTM1Q86WC4 334 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 ZNF280BQ86YH2 543 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 CRYBG2Q8N1P7 616 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 ULK4Q96C45 1275 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 TCF25Q9BQ70 676 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 TRIM55Q9BYV6 548 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 ROPN1BQ9BZX4 212 aaPredicted RBP9.33□□□□□ -0.92
LIG4-202ENST00000405925 BRD8Q9H0E9 1235 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 XYLT2Q9H1B5 865 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 ROPN1Q9HAT0 212 aaPredicted RBP9.33□□□□□ -0.92
LIG4-202ENST00000405925 TRHDEQ9UKU6 1024 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 HACD1B0YJ81 288 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 ENPP3O14638 875 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 FAM153BP0C7A2 387 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 FECHP22830 423 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 CHKAP35790 457 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 PLA2G4AP47712 749 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 MNAT1P51948 309 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 WNT7BP56706 349 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 GEMIN4P57678 1058 aaKnown RBP9.33□□□□□ -0.92
LIG4-202ENST00000405925 FAM153CQ494X1 144 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 BRMS1LQ5PSV4 323 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 C1orf220Q5T0J3 134 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 CLEC20AQ6ZU45 233 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 CPNE8Q86YQ8 564 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 TTC30BQ8N4P2 665 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 LPCAT1Q8NF37 534 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 ARNTL2Q8WYA1 636 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 FAM136AQ96C01 138 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 FUT8Q9BYC5 575 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 BCO2Q9BYV7 579 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 HAPLN2Q9GZV7 340 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 THG1LQ9NWX6 298 aaKnown RBP9.33□□□□□ -0.92
LIG4-202ENST00000405925 PLK2Q9NYY3 685 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 FAM153AQ9UHL3 310 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 LAMA4Q16363 1823 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 MYO7AQ13402 2215 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 CFAP99D6REC4 459 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 TTC4O95801 387 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 MMP13P45452 471 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 DPYSL3Q14195 570 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 CCNJLQ8IV13 435 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 CFAP52Q8N1V2 620 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 LRRC57Q8N9N7 239 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 SMG8Q8ND04 991 aaKnown RBP9.33□□□□□ -0.92
LIG4-202ENST00000405925 LMO3Q8TAP4 145 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 PBXIP1Q96AQ6 731 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 FGD4Q96M96 766 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 C2orf49Q9BVC5 232 aaPredicted RBP9.33□□□□□ -0.92
LIG4-202ENST00000405925 STRA6Q9BX79 667 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 PPCSQ9HAB8 311 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 SEPT3Q9UH03 358 aa9.33□□□□□ -0.92
LIG4-202ENST00000405925 A0A0A0MRY4 1105 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 TMEM120BA0PK00 339 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 FAM47DPA6NHR8 397 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 C2CD4BA6NLJ0 364 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 SPTLC1O15269 473 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 CCL16O15467 120 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 ZNF623O75123 536 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 COL6A1P12109 1028 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 CHRM3P20309 590 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 PSMB4P28070 264 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 SSTR1P30872 391 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 ATXN1P54253 815 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 CDH17Q12864 832 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 PTK6Q13882 451 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 MRNIPQ6NTE8 343 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 CES3Q6UWW8 571 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 TAC4Q86UU9 113 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 SMG7Q92540 1137 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms