RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CXCL17Q6UXB2 119 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 PDZD4Q76G19 769 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 CAND1Q86VP6 1230 aaKnown RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 CCNYQ8ND76 341 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 LRRN4Q8WUT4 740 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 HTR3CQ8WXA8 447 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 CENPIQ92674 756 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 INPP5DQ92835 1189 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 EBNA1BP2Q99848 306 aaKnown RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 MTO1Q9Y2Z2 717 aaKnown RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 CAPN9O14815 690 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 HCRTO43612 131 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 CREB3O43889 395 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 HAUS5O94927 633 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 ZNF865P0CJ78 1059 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-204ENST00000392003 FGFR1P11362 822 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 NEK3P51956 506 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 POLE2P56282 527 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 CDK16Q00536 496 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 ALKAL1Q6UXT8 129 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 ASRGL1Q7L266 308 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 PIGZQ86VD9 579 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 PPP1R14CQ8TAE6 165 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 LRMDAQ9H2I8 198 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 SAR1AQ9NR31 198 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 NOP53Q9NZM5 478 aaKnown RBP9.92□□□□□ -0.82
COL6A3-204ENST00000392003 SEPT10Q9P0V9 454 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 RCOR3Q9P2K3 495 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-204ENST00000392003 METTL18O95568 372 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 RARBP10826 455 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 KCNE1P15382 129 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 BGNP21810 368 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 PRKCHP24723 683 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 ADIGQ0VDE8 80 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 AP1B1Q10567 949 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 PARP6Q2NL67 630 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 SLC25A52Q3SY17 297 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 TAF1BQ53T94 588 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-204ENST00000392003 FAM182AQ5T1J6 154 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 C17orf99Q6UX52 265 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 UNC5AQ6ZN44 842 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 MTDHQ86UE4 582 aaKnown RBP9.92□□□□□ -0.82
COL6A3-204ENST00000392003 PSTKQ8IV42 348 aaKnown RBP9.92□□□□□ -0.82
COL6A3-204ENST00000392003 CCDC33Q8N5R6 958 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 CCDC185Q8N715 623 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 B3GALNT2Q8NCR0 500 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 KBTBD7Q8WVZ9 684 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 OSBPL10Q9BXB5 764 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 OXCT2Q9BYC2 517 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-204ENST00000392003 SLC13A1Q9BZW2 595 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 AASDHPPTQ9NRN7 309 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 PHF24Q9UPV7 400 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 GNEQ9Y223 722 aaKnown RBP9.92□□□□□ -0.82
COL6A3-204ENST00000392003 A0A0A0MRY4 1105 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 MBLAC1A4D2B0 266 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-204ENST00000392003 CYB561D2O14569 222 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 DAB1O75553 588 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 GABBR2O75899 941 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 FAM155BO75949 473 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 GOT1P17174 413 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 NOS2P35228 1153 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 TUFMP49411 452 aaKnown RBP9.92□□□□□ -0.82
COL6A3-204ENST00000392003 TMPRSS15P98073 1019 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 PDK1Q15118 436 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 SPDYAQ5MJ70 313 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 ANKRD20A2Q5SQ80 823 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 ANKRD20A1Q5TYW2 823 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 BSPRYQ5W0U4 402 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 DENND5BQ6ZUT9 1274 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 TOP6BLQ8N6T0 577 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 SPATA13Q96N96 652 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 DUSP16Q9BY84 665 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 TXNDC16Q9P2K2 825 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 NME7Q9Y5B8 376 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 TRIP11Q15643 1979 aa9.92□□□□□ -0.82
COL6A3-204ENST00000392003 A0A1W2PQ67 120 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 M0QYT0 321 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 BDNFP23560 247 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 CNTFP26441 200 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 CRYBB1P53674 252 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-204ENST00000392003 IFRD2Q12894 506 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-204ENST00000392003 CBLBQ13191 982 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 SEMA5AQ13591 1074 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 BMPR2Q13873 1038 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 NUDCD3Q8IVD9 361 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 NDUFAF2Q8N183 169 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 SMYD1Q8NB12 490 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 COLGALT1Q8NBJ5 622 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 AGAP11Q8TF27 550 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 HNRNPABQ99729 332 aaKnown RBP9.91□□□□□ -0.82
COL6A3-204ENST00000392003 MTG1Q9BT17 334 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-204ENST00000392003 GOLGA2P5Q9HBQ8 144 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 DTLQ9NZJ0 730 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 HEY2Q9UBP5 337 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 PCDHA11Q9Y5I1 949 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 CXorf49A8MYA2 514 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-204ENST00000392003 SPTLC1O15269 473 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 OPHN1O60890 802 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 TGDSO95455 350 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 PTPN1P18031 435 aaKnown RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms