RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TBX20Q9UMR3 447 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 STK36Q9NRP7 1315 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 A8MUI8 341 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 NEK2P51955 445 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 SH3BP5LQ7L8J4 393 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 TP53INP2Q8IXH6 220 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 BLOC1S5Q8TDH9 187 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 RBM41Q96IZ5 413 aaKnown RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 KCNK4Q9NYG8 393 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 FBXW2Q9UKT8 454 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 EIF3LQ9Y262 564 aaKnown RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 INSL5Q9Y5Q6 135 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 C4orf47A7E2U8 309 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 MEN1O00255 615 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 CEP104O60308 925 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 ANXA9O76027 345 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 HLA-DRAP01903 254 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 GLRBP48167 497 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 LRRC63Q05C16 580 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 SPECC1LQ69YQ0 1117 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 UNC13DQ70J99 1090 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 TMPRSS6Q8IU80 811 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 ZNF461Q8TAF7 563 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 EDEM1Q92611 657 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 ARMC7Q9H6L4 198 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 B4GALT7Q9UBV7 327 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 PSME2Q9UL46 239 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 POLR1DQ9Y2S0 133 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 A0A0U1RQF3 1178 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 PLA2G6O60733 806 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 PTPN1P18031 435 aaKnown RBP8.63□□□□□ -1.03
HMGB1-203ENST00000341423 JAK1P23458 1154 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 GRIK5Q16478 980 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 CCDC38Q502W7 563 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 MMS22LQ6ZRQ5 1243 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 PPM1NQ8N819 430 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 LPCAT1Q8NF37 534 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 FBXO18Q8NFZ0 1043 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 VN1R2Q8NFZ6 395 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 FERD3LQ96RJ6 166 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 POLR3CQ9BUI4 534 aaPredicted RBP8.63□□□□□ -1.03
HMGB1-203ENST00000341423 CARD6Q9BX69 1037 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 PXDNQ92626 1479 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 CAPN14A8MX76 684 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 CLDN4O14493 209 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 KAT7O95251 611 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 TYMPP19971 482 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 TFF2Q03403 129 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 CAPRIN1Q14444 709 aaKnown RBP8.63□□□□□ -1.03
HMGB1-203ENST00000341423 C9orf50Q5SZB4 431 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 PDSS1Q5T2R2 415 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 SLC9B2Q86UD5 537 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 FAM160A2Q8N612 972 aaPredicted RBP8.63□□□□□ -1.03
HMGB1-203ENST00000341423 JPH3Q8WXH2 748 aaPredicted RBP8.63□□□□□ -1.03
HMGB1-203ENST00000341423 C18orf25Q96B23 403 aaPredicted RBP8.63□□□□□ -1.03
HMGB1-203ENST00000341423 ZHX1-C8orf76Q96EF9 292 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 IER2Q9BTL4 223 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 KCND3Q9UK17 655 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 RARRES3Q9UL19 164 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 USP32Q8NFA0 1604 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 CEP290O15078 2479 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 EDDM13A0A1B0GTR0 161 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 CYP7B1O75881 506 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 ATP6V1C1P21283 382 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 CD72P21854 359 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 NMT1P30419 496 aaKnown RBP8.63□□□□□ -1.03
HMGB1-203ENST00000341423 AVPR1BP47901 424 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 NR0B2Q15466 257 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 LRIT3Q3SXY7 679 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 SEZ6Q53EL9 994 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 PSAPL1Q6NUJ1 521 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 WDR75Q8IWA0 830 aaKnown RBP8.63□□□□□ -1.03
HMGB1-203ENST00000341423 SLC25A41Q8N5S1 370 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 DEFB124Q8NES8 71 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 CALML6Q8TD86 181 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 FBF1Q8TES7 1133 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 GAREM1Q9H706 876 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 NGBQ9NPG2 151 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 GPR34Q9UPC5 381 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 PLAGL2Q9UPG8 496 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 WNT6Q9Y6F9 365 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 ABCC6O95255 1503 aa8.63□□□□□ -1.03
HMGB1-203ENST00000341423 GOLGA8QA0A0J9YX86 632 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 LINC01553A4QN01 128 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 GOLGA8OA6NCC3 632 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 GOLGA8NF8WBI6 632 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 PCCBP05166 539 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 HLA-EP13747 358 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 RPA1P27694 616 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 ALDH18A1P54886 795 aaKnown RBP8.62□□□□□ -1.03
HMGB1-203ENST00000341423 ARG2P78540 354 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 CCDC186Q7Z3E2 898 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 LONP2Q86WA8 852 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 ZADH2Q8N4Q0 377 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 RADILQ96JH8 1075 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 TM6SF2Q9BZW4 377 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 MTMR12Q9C0I1 747 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 TLDC2A0PJX2 215 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 SEMA4FO95754 770 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 NDUFS1P28331 727 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms