RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TTC4O95801 387 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 LRG1P02750 347 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 GAD2Q05329 585 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 MORF4L2Q15014 288 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 APBB2Q92870 758 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 ETNK2Q9NVF9 386 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 NINJ2Q9NZG7 142 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 ARHGAP42A6NI28 874 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 PTPN9P43378 593 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 CES3Q6UWW8 571 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 MRPL10Q7Z7H8 261 aaKnown RBP16.21■□□□□ 0.19
CPSF1-213ENST00000620219 ARHGAP18Q8N392 663 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 NIPA2Q8N8Q9 360 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 ATP6V0D2Q8N8Y2 350 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 CABS1Q96KC9 395 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 FCRL2Q96LA5 508 aaPredicted RBP16.21■□□□□ 0.19
CPSF1-213ENST00000620219 ZNF670Q9BS34 389 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 C11orf49Q9H6J7 331 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 SMYD2Q9NRG4 433 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 PHF24Q9UPV7 400 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.21■□□□□ 0.18
CPSF1-213ENST00000620219 TLR5O60602 858 aa16.21■□□□□ 0.18
CPSF1-213ENST00000620219 KLRC2P26717 231 aa16.21■□□□□ 0.18
CPSF1-213ENST00000620219 MGAT3Q09327 533 aa16.21■□□□□ 0.18
CPSF1-213ENST00000620219 BBS5Q8N3I7 341 aa16.21■□□□□ 0.18
CPSF1-213ENST00000620219 TTC9BQ8N6N2 239 aa16.21■□□□□ 0.18
CPSF1-213ENST00000620219 ARFGAP1Q8N6T3 406 aa16.21■□□□□ 0.18
CPSF1-213ENST00000620219 SERPINB11Q96P15 392 aa16.21■□□□□ 0.18
CPSF1-213ENST00000620219 SLC13A1Q9BZW2 595 aa16.21■□□□□ 0.18
CPSF1-213ENST00000620219 ETNK1Q9HBU6 452 aa16.21■□□□□ 0.18
CPSF1-213ENST00000620219 TPH1P17752 444 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 ELK3P41970 407 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 ITPRIPL1Q6GPH6 555 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 CCDC91Q7Z6B0 441 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 FBXO22Q8NEZ5 403 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 KCNN1Q92952 543 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 UBXN6Q9BZV1 441 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 NME7Q9Y5B8 376 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 LOC285556D6RIA3 1793 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 MFSD11O43934 449 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 MYL4P12829 197 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 TYMPP19971 482 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 GABRB2P47870 512 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 IFT88Q13099 833 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 ZNF235Q14590 738 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 KIAA0319Q5VV43 1072 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 FAM126BQ8IXS8 530 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 CMASQ8NFW8 434 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-213ENST00000620219 FAM124BQ9H5Z6 455 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-213ENST00000620219 PAGE1O75459 146 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 TCEAL1Q15170 157 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 CYP1B1Q16678 543 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 BRCA2P51587 3418 aa16.2■□□□□ 0.18
CPSF1-213ENST00000620219 EIF3HO15372 352 aaKnown RBP eCLIP16.19■□□□□ 0.183e-8■■□□□ 12.8
CPSF1-213ENST00000620219 ITGAVP06756 1048 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 TUFMP49411 452 aaKnown RBP16.19■□□□□ 0.18
CPSF1-213ENST00000620219 MAP3K21Q5TCX8 1036 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 FAM47EQ6ZV65 393 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 MRPL17Q9NRX2 175 aaKnown RBP16.19■□□□□ 0.18
CPSF1-213ENST00000620219 OR6C75A6NL08 312 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 GALTP07902 379 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 STAT4Q14765 748 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 MON1AQ86VX9 555 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 C7orf61Q8IZ16 206 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 FBF1Q8TES7 1133 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 PRMT1Q99873 361 aaKnown RBP16.19■□□□□ 0.18
CPSF1-213ENST00000620219 MUC3BQ9H195 1237 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 ARHGEF4Q9NR80 690 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 RRN3Q9NYV6 651 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 CDH16O75309 829 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 DRG2P55039 364 aaKnown RBP16.19■□□□□ 0.18
CPSF1-213ENST00000620219 NOMO1Q15155 1222 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 SLC45A4Q5BKX6 768 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 ANKRD22Q5VYY1 191 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 RAPH1Q70E73 1250 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 CFAP52Q8N1V2 620 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 DRG1Q9Y295 367 aaKnown RBP16.19■□□□□ 0.18
CPSF1-213ENST00000620219 C3orf70A6NLC5 250 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-213ENST00000620219 SLC2A3P11169 496 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 L1CAMP32004 1257 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 CXorf38Q8TB03 319 aa16.19■□□□□ 0.18
CPSF1-213ENST00000620219 LRIG2O94898 1065 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 EPHB3P54753 998 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 KLF1Q13351 362 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-213ENST00000620219 TRNP1Q6NT89 227 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 FIBCD1Q8N539 461 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 MTIF3Q9H2K0 278 aaKnown RBP16.18■□□□□ 0.18
CPSF1-213ENST00000620219 CERS4Q9HA82 394 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 F5H5T6 163 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 PSMB4P28070 264 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 ARL1P40616 181 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-213ENST00000620219 SLC12A2P55011 1212 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 ZBTB16Q05516 673 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 RTP2Q5QGT7 225 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 VSTM1Q6UX27 236 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 SPPL2BQ8TCT7 592 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 TBC1D31Q96DN5 1066 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 CYTH2Q99418 400 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 RBM22Q9NW64 420 aaKnown RBP eCLIP16.18■□□□□ 0.186e-8■■■■■ 31.6
CPSF1-213ENST00000620219 GGT7Q9UJ14 662 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms