RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 HMX2A2RU54 273 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 HSPA4LO95757 839 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 LCA5Q86VQ0 697 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 DRAXINQ8NBI3 349 aaPredicted RBP15.71■□□□□ 0.11
UPF1-204ENST00000596842 C7orf26Q96N11 449 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 GCNAQ96QF7 691 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 MRPL45Q9BRJ2 306 aaKnown RBP15.71■□□□□ 0.11
UPF1-204ENST00000596842 C2orf40Q9H1Z8 148 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 DPP3Q9NY33 737 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 AP4E1Q9UPM8 1137 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 ZBTB7AO95365 584 aa15.71■□□□□ 0.1
UPF1-204ENST00000596842 FAM200BP0CF97 657 aa15.71■□□□□ 0.1
UPF1-204ENST00000596842 TXNP10599 105 aaKnown RBP15.71■□□□□ 0.1
UPF1-204ENST00000596842 CCDC130P13994 396 aa15.71■□□□□ 0.1
UPF1-204ENST00000596842 RABGGTBP53611 331 aa15.71■□□□□ 0.1
UPF1-204ENST00000596842 LBRQ14739 615 aaKnown RBP15.71■□□□□ 0.1
UPF1-204ENST00000596842 COLGALT1Q8NBJ5 622 aa15.71■□□□□ 0.1
UPF1-204ENST00000596842 PLAC1Q9HBJ0 212 aa15.71■□□□□ 0.1
UPF1-204ENST00000596842 XPNPEP3Q9NQH7 507 aa15.71■□□□□ 0.1
UPF1-204ENST00000596842 UBP1Q9NZI7 540 aa15.71■□□□□ 0.1
UPF1-204ENST00000596842 PLA2G4CQ9UP65 541 aa15.71■□□□□ 0.1
UPF1-204ENST00000596842 B4GALT4O60513 344 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 ACTR3P61158 418 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 MAP3K10Q02779 954 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 DLG2Q15700 870 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 TBC1D25Q3MII6 688 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 MMEL1Q495T6 779 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 SPDYAQ5MJ70 313 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 PDPK2PQ6A1A2 396 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 PID1Q7Z2X4 250 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 NET1Q7Z628 596 aaPredicted RBP15.7■□□□□ 0.1
UPF1-204ENST00000596842 CDKL3Q8IVW4 592 aaPredicted RBP15.7■□□□□ 0.1
UPF1-204ENST00000596842 PHTF2Q8N3S3 785 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 MARK4Q96L34 752 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 SIGLEC10Q96LC7 697 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 FAM49AQ9H0Q0 323 aaPredicted RBP15.7■□□□□ 0.1
UPF1-204ENST00000596842 TMEM216Q9P0N5 145 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 BARX2Q9UMQ3 279 aaPredicted RBP15.7■□□□□ 0.1
UPF1-204ENST00000596842 EVPLQ92817 2033 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 CAPN14A8MX76 684 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 RNASEH1O60930 286 aaKnown RBP15.7■□□□□ 0.1
UPF1-204ENST00000596842 SIN3BO75182 1162 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 GSTT1P30711 240 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 GLRBP48167 497 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 DYNC1I2Q13409 638 aaKnown RBP15.7■□□□□ 0.1
UPF1-204ENST00000596842 CCDC185Q8N715 623 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 PIP4K2CQ8TBX8 421 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 RPL26L1Q9UNX3 145 aaKnown RBP15.7■□□□□ 0.1
UPF1-204ENST00000596842 FESP07332 822 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 SERPINA6P08185 405 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 AQP4P55087 323 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 ENPEPQ07075 957 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 MED21Q13503 144 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 TTLL12Q14166 644 aaPredicted RBP15.7■□□□□ 0.1
UPF1-204ENST00000596842 MTMR14Q8NCE2 650 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 GDPD5Q8WTR4 605 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 NMD3Q96D46 503 aaKnown RBP15.7■□□□□ 0.1
UPF1-204ENST00000596842 SIRPGQ9P1W8 387 aa15.7■□□□□ 0.1
UPF1-204ENST00000596842 PAIP2BQ9ULR5 123 aaKnown RBP15.7■□□□□ 0.1
UPF1-204ENST00000596842 HNRNPRO43390 633 aaKnown RBP15.69■□□□□ 0.1
UPF1-204ENST00000596842 RAG1P15918 1043 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 SLC10A6Q3KNW5 377 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 CYP4V2Q6ZWL3 525 aaPredicted RBP15.69■□□□□ 0.1
UPF1-204ENST00000596842 TTC30AQ86WT1 665 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 TP53INP2Q8IXH6 220 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.69■□□□□ 0.1
UPF1-204ENST00000596842 USP13Q92995 863 aaPredicted RBP15.69■□□□□ 0.1
UPF1-204ENST00000596842 OTUD5Q96G74 571 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 DPEP3Q9H4B8 488 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 ZNF232Q9UNY5 417 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 TRIP11Q15643 1979 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 ATP6V1B1P15313 513 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 PSMB4P28070 264 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 ARL4AP40617 200 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 HDAC4P56524 1084 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 MCCD1P59942 119 aaPredicted RBP15.69■□□□□ 0.1
UPF1-204ENST00000596842 SFT2D3Q587I9 215 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 IL31Q6EBC2 164 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 FAM167AQ96KS9 214 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 CCDC106Q9BWC9 280 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 PREBQ9HCU5 417 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 PAPSS1O43252 624 aaPredicted RBP15.69■□□□□ 0.1
UPF1-204ENST00000596842 MAGEC1O60732 1142 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 TRPA1O75762 1119 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 ALDOAP04075 364 aaKnown RBP15.69■□□□□ 0.1
UPF1-204ENST00000596842 ZNF286BP0CG31 522 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 RALBP11234 206 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 INSRRP14616 1297 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 TEX44Q53QW1 395 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 TSHZ1Q6ZSZ6 1077 aa15.69■□□□□ 0.1
UPF1-204ENST00000596842 ZNF669Q96BR6 464 aaPredicted RBP15.69■□□□□ 0.1
UPF1-204ENST00000596842 WDR55Q9H6Y2 383 aaPredicted RBP15.69■□□□□ 0.1
UPF1-204ENST00000596842 TPH1P17752 444 aa15.68■□□□□ 0.1
UPF1-204ENST00000596842 ARF4P18085 180 aaPredicted RBP15.68■□□□□ 0.1
UPF1-204ENST00000596842 PAX3P23760 479 aa15.68■□□□□ 0.1
UPF1-204ENST00000596842 CRHR1P34998 444 aa15.68■□□□□ 0.1
UPF1-204ENST00000596842 TBL3Q12788 808 aaKnown RBP15.68■□□□□ 0.1
UPF1-204ENST00000596842 PDK2Q15119 407 aa15.68■□□□□ 0.1
UPF1-204ENST00000596842 DCAF6Q58WW2 860 aa15.68■□□□□ 0.1
UPF1-204ENST00000596842 SPATA24Q86W54 205 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms