RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ANKRD20A12PQ8NF67 263 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 WFIKKN2Q8TEU8 576 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 ERLEC1Q96DZ1 483 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 SLC39A13Q96H72 371 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 STK33Q9BYT3 514 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 VPS16Q9H269 839 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 CD248Q9HCU0 757 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 PLCB1Q9NQ66 1216 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 ABCB8Q9NUT2 735 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 FANCLQ9NW38 375 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 ASNSD1Q9NWL6 643 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 TJP2Q9UDY2 1190 aa15.86■□□□□ 0.13
TRIM28-203ENST00000593582 SDK1Q7Z5N4 2213 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 HSF2BPO75031 334 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 ZNF217O75362 1048 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 TRUB2O95900 331 aaKnown RBP15.85■□□□□ 0.13
TRIM28-203ENST00000593582 MOCS2O96007 188 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-203ENST00000593582 NDUFV2P19404 249 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 SLC6A4P31645 630 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 IL12RB1P42701 662 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 DHPSP49366 369 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-203ENST00000593582 SGSHP51688 502 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 CDK17Q00537 523 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 MYL5Q02045 173 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 ENPP2Q13822 863 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 ZNF234Q14588 700 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 TAF5Q15542 800 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 FKBP15Q5T1M5 1219 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 TMEM215Q68D42 235 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 NADSYN1Q6IA69 706 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 OR6B2Q6IFH4 312 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 CYP2U1Q7Z449 544 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 CCDC117Q8IWD4 279 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-203ENST00000593582 AHI1Q8N157 1196 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 FRMD1Q8N878 549 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 TMEM35BQ8NCS4 154 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 MRGPRX1Q96LB2 322 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 RTKNQ9BST9 563 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 NAA15Q9BXJ9 866 aaKnown RBP15.85■□□□□ 0.13
TRIM28-203ENST00000593582 FAM204AQ9H8W3 233 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 SLC12A6Q9UHW9 1150 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 MBD1Q9UIS9 605 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-203ENST00000593582 GGA2Q9UJY4 613 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 PLA2G4CQ9UP65 541 aa15.85■□□□□ 0.13
TRIM28-203ENST00000593582 SPAG17Q6Q759 2223 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 MYO18AQ92614 2054 aaKnown RBP15.84■□□□□ 0.13
TRIM28-203ENST00000593582 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 F8VZ95 297 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 GDF9O60383 454 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 GRAP2O75791 330 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 IGLV3-25P01717 112 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 ERBB2P04626 1255 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 SLC2A3P11169 496 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 PABPC1P11940 636 aaKnown RBP15.84■□□□□ 0.13
TRIM28-203ENST00000593582 ATXN1P54253 815 aaKnown RBP15.84■□□□□ 0.13
TRIM28-203ENST00000593582 FUT11Q495W5 492 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 PTPN20Q4JDL3 420 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 ZC3H12AQ5D1E8 599 aaKnown RBP15.84■□□□□ 0.13
TRIM28-203ENST00000593582 RNF43Q68DV7 783 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 SERPINA13PQ6UXR4 307 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 SLC36A4Q6YBV0 504 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 FAM183BPQ6ZVS7 135 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 CHST9Q7L1S5 443 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 MFN1Q8IWA4 741 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 TMEFF1Q8IYR6 380 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.84■□□□□ 0.133e-6■■■■■ 42.5
TRIM28-203ENST00000593582 SORCS1Q8WY21 1168 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 BTN2A3PQ96KV6 586 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 SLC2A13Q96QE2 648 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 SMOC1Q9H4F8 434 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.84■□□□□ 0.13
TRIM28-203ENST00000593582 DDIT4Q9NX09 232 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 STIM2Q9P246 746 aa15.84■□□□□ 0.13
TRIM28-203ENST00000593582 SLC30A4O14863 429 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 AP5Z1O43299 807 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 ATP5BP06576 529 aaKnown RBP15.83■□□□□ 0.12
TRIM28-203ENST00000593582 EPHX1P07099 455 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 RPS24P62847 133 aaKnown RBP15.83■□□□□ 0.12
TRIM28-203ENST00000593582 SLC6A3Q01959 620 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 RPL6Q02878 288 aaKnown RBP15.83■□□□□ 0.12
TRIM28-203ENST00000593582 FNDC3BQ53EP0 1204 aaKnown RBP15.83■□□□□ 0.12
TRIM28-203ENST00000593582 MS4A13Q5J8X5 152 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 TAF3Q5VWG9 929 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 OLFML1Q6UWY5 402 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 KIAA1324Q6UXG2 1013 aaKnown RBP15.83■□□□□ 0.12
TRIM28-203ENST00000593582 SLC26A9Q7LBE3 791 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 KIAA0907Q7Z7F0 614 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-203ENST00000593582 ADIPOR2Q86V24 386 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 ZDHHC17Q8IUH5 632 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 DEFB106AQ8N104 65 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 FIBINQ8TAL6 211 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 RNF34Q969K3 372 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 PRICKLE1Q96MT3 831 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-203ENST00000593582 NUCKS1Q9H1E3 243 aaKnown RBP15.83■□□□□ 0.12
TRIM28-203ENST00000593582 PRDM16Q9HAZ2 1276 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 FAM207AQ9NSI2 230 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-203ENST00000593582 CYP8B1Q9UNU6 501 aa15.83■□□□□ 0.12
TRIM28-203ENST00000593582 SYNJ2BP-COX16A0A087WUM0 186 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 KCNU1A8MYU2 1149 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 LSM8O95777 96 aaKnown RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms