RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 WASH3PC4AMC7 463 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 SLC30A4O14863 429 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 HSF2BPO75031 334 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 TRUB2O95900 331 aaKnown RBP12.85□□□□□ -0.35
SS18-225ENST00000585121 ATP5BP06576 529 aaKnown RBP12.85□□□□□ -0.35
SS18-225ENST00000585121 SLC2A3P11169 496 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 NDUFV2P19404 249 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 ZNF234Q14588 700 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 NFKBIBQ15653 356 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 MAP7D1Q3KQU3 841 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 CCDC183Q5T5S1 534 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 SYPL2Q5VXT5 272 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 IL31Q6EBC2 164 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 KIAA1211LQ6NV74 962 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 SERPINA13PQ6UXR4 307 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 CHST9Q7L1S5 443 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 MFN1Q8IWA4 741 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 AHI1Q8N157 1196 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 ATP6V0D2Q8N8Y2 350 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 TMEM35BQ8NCS4 154 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 C1orf131Q8NDD1 294 aaKnown RBP12.85□□□□□ -0.35
SS18-225ENST00000585121 ERLEC1Q96DZ1 483 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 SLC39A13Q96H72 371 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 FCRL2Q96LA5 508 aaPredicted RBP12.85□□□□□ -0.35
SS18-225ENST00000585121 CPXM1Q96SM3 734 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 STK33Q9BYT3 514 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 FAM204AQ9H8W3 233 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 ABCB8Q9NUT2 735 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.85□□□□□ -0.35
SS18-225ENST00000585121 STIM2Q9P246 746 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 TJP2Q9UDY2 1190 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 GGA2Q9UJY4 613 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 FHOD1Q9Y613 1164 aa12.85□□□□□ -0.35
SS18-225ENST00000585121 KIAA1549LQ6ZVL6 1849 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 KHNYNO15037 678 aaKnown RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 NDUFS2O75306 463 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 EPHX1P07099 455 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 PNMA6AP0CW24 399 aaPredicted RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 PABPC1P11940 636 aaKnown RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 UCHL3P15374 230 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 POLR2EP19388 210 aaKnown RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 CDK11BP21127 795 aaKnown RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 ABCB4P21439 1286 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 HLA-FP30511 346 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 IL12RB1P42701 662 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 RPL6Q02878 288 aaKnown RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 KCNMA1Q12791 1236 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 MTA1Q13330 715 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 KRT31Q15323 416 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 FNDC3BQ53EP0 1204 aaKnown RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 FAM133BQ5BKY9 247 aaKnown RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 ZC3H12AQ5D1E8 599 aaKnown RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 LYSMD4Q5XG99 296 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 ZDHHC17Q8IUH5 632 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 TMEFF1Q8IYR6 380 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 DEFB106AQ8N104 65 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 WDTC1Q8N5D0 677 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.84□□□□□ -0.35
SS18-225ENST00000585121 MSANTD4Q8NCY6 345 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 DDX1Q92499 740 aaKnown RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 PIGKQ92643 395 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 BTN2A3PQ96KV6 586 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 SMOC1Q9H4F8 434 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 PRDM16Q9HAZ2 1276 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 PLCB1Q9NQ66 1216 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 AJAP1Q9UKB5 411 aaPredicted RBP12.84□□□□□ -0.35
SS18-225ENST00000585121 CYP8B1Q9UNU6 501 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 DAAM1Q9Y4D1 1078 aa12.84□□□□□ -0.35
SS18-225ENST00000585121 GDF9O60383 454 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 MOCS3O95396 460 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 ACADMP11310 421 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 CYP11B1P15538 503 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 SLC6A4P31645 630 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 CCR1P32246 355 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 SLC6A3Q01959 620 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 MYL5Q02045 173 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 CDH18Q13634 790 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 TAF5Q15542 800 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 FUT11Q495W5 492 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 MS4A13Q5J8X5 152 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 CDKAL1Q5VV42 579 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 FAM183BPQ6ZVS7 135 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 ARMCX6Q7L4S7 300 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 CHSY1Q86X52 802 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 CARNMT1Q8N4J0 409 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 FIBINQ8TAL6 211 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 SIPA1Q96FS4 1042 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 MRGPRX1Q96LB2 322 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 PCMTD1Q96MG8 357 aaPredicted RBP12.83□□□□□ -0.35
SS18-225ENST00000585121 SLC2A13Q96QE2 648 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 FANCLQ9NW38 375 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 DDIT4Q9NX09 232 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 RRN3Q9NYV6 651 aa12.83□□□□□ -0.35
SS18-225ENST00000585121 MBD1Q9UIS9 605 aaPredicted RBP12.83□□□□□ -0.35
SS18-225ENST00000585121 SYNJ2BP-COX16A0A087WUM0 186 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 IGHV1OR15-9A0A0B4J2B8 117 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 DCDC2BA2VCK2 349 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 F5H5T6 163 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 H0Y626 953 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms