RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 HYOU1Q9Y4L1 999 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 IGLV3-10A0A075B6K4 115 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 ANTXRLA6NF34 631 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 FANCGO15287 622 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 BUB1O43683 1085 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 LATS1O95835 1130 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 PENKP01210 267 aaPredicted RBP9.63□□□□□ -0.87
VPS35-211ENST00000569950 GDI1P31150 447 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 CCR1P32246 355 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 PCK1P35558 622 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 MARCKSL1P49006 195 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 KPNA1P52294 538 aaPredicted RBP9.63□□□□□ -0.87
VPS35-211ENST00000569950 MLLT6P55198 1093 aaPredicted RBP9.63□□□□□ -0.87
VPS35-211ENST00000569950 KRT83P78385 493 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 NRG1Q02297 640 aaPredicted RBP9.63□□□□□ -0.87
VPS35-211ENST00000569950 TDGQ13569 410 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 PIGHQ14442 188 aaPredicted RBP9.63□□□□□ -0.87
VPS35-211ENST00000569950 ACAP1Q15027 740 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 ATP13A4Q4VNC1 1196 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 ARHGAP29Q52LW3 1261 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 BRMS1LQ5PSV4 323 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 NUGGCQ68CJ6 796 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 ASTLQ6HA08 431 aaPredicted RBP9.63□□□□□ -0.87
VPS35-211ENST00000569950 C11orf63Q6NUN7 778 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 RFWD3Q6PCD5 774 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 C12orf40Q86WS4 652 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 RHOT2Q8IXI1 618 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 ETFBKMTQ8IXQ9 262 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 GJD3Q8N144 294 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 PHTF2Q8N3S3 785 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 CPXM2Q8N436 756 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 WFDC5Q8TCV5 224 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 TSC1Q92574 1164 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 EZH1Q92800 747 aaPredicted RBP9.63□□□□□ -0.87
VPS35-211ENST00000569950 IGSF8Q969P0 613 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 LMLNQ96KR4 655 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 SNRNP25Q9BV90 132 aaKnown RBP9.63□□□□□ -0.87
VPS35-211ENST00000569950 TRMT61BQ9BVS5 477 aaKnown RBP9.63□□□□□ -0.87
VPS35-211ENST00000569950 IRX2Q9BZI1 471 aaPredicted RBP9.63□□□□□ -0.87
VPS35-211ENST00000569950 NACA2Q9H009 215 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 TKTL2Q9H0I9 626 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 EBF3Q9H4W6 596 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 TRPV5Q9NQA5 729 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 GPATCH2LQ9NWQ4 482 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 GTSE1Q9NYZ3 720 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 MARK1Q9P0L2 795 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 IP6K2Q9UHH9 426 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 FBXO10Q9UK96 956 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 FZD10Q9ULW2 581 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 DUSP12Q9UNI6 340 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 PAXBP1Q9Y5B6 917 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 HS3ST4Q9Y661 456 aa9.63□□□□□ -0.87
VPS35-211ENST00000569950 C3orf70A6NLC5 250 aaPredicted RBP9.62□□□□□ -0.87
VPS35-211ENST00000569950 DRGXA6NNA5 263 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 MYO1FO00160 1098 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 TRDMT1O14717 391 aaKnown RBP9.62□□□□□ -0.87
VPS35-211ENST00000569950 TRIM24O15164 1050 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 MOCS3O95396 460 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 MOCS2O96007 188 aaPredicted RBP9.62□□□□□ -0.87
VPS35-211ENST00000569950 F9P00740 461 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 CCDC175P0C221 793 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 RARAP10276 462 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 SRFP11831 508 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 TACR2P21452 398 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 COMTP21964 271 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 IL4RP24394 825 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 HOXD9P28356 352 aaPredicted RBP9.62□□□□□ -0.87
VPS35-211ENST00000569950 HOXC13P31276 330 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 GBP1P32455 592 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 OPRD1P41143 372 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 SOX9P48436 509 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 RPS24P62847 133 aaKnown RBP9.62□□□□□ -0.87
VPS35-211ENST00000569950 AUHQ13825 339 aaKnown RBP9.62□□□□□ -0.87
VPS35-211ENST00000569950 MESDQ14696 234 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 DHCR24Q15392 516 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 LY6G5CQ5SRR4 150 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 ADGRF1Q5T601 910 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 RAP1GAP2Q684P5 730 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 FBXL22Q6P050 247 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 CC2D1AQ6P1N0 951 aaPredicted RBP9.62□□□□□ -0.87
VPS35-211ENST00000569950 TXNDC11Q6PKC3 985 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 SFTPA1Q8IWL2 248 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 OR52K2Q8NGK3 314 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 IRF7Q92985 503 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 OTUB2Q96DC9 234 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 BTN2A3PQ96KV6 586 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 C1orf74Q96LT6 269 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 HAPLN3Q96S86 360 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 KCTD15Q96SI1 283 aaPredicted RBP9.62□□□□□ -0.87
VPS35-211ENST00000569950 DCLK3Q9C098 648 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 OSBPL2Q9H1P3 480 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 WDCPQ9H6R7 721 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 ECT2Q9H8V3 914 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 FBRSL1Q9HCM7 1045 aaKnown RBP9.62□□□□□ -0.87
VPS35-211ENST00000569950 SPHK2Q9NRA0 654 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 KCND1Q9NSA2 647 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 DUS2Q9NX74 493 aaKnown RBP9.62□□□□□ -0.87
VPS35-211ENST00000569950 MUTYHQ9UIF7 546 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 HCN2Q9UL51 889 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 USP18Q9UMW8 372 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms