RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ARID5BQ14865 1188 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 SLC25A52Q3SY17 297 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 MS4A13Q5J8X5 152 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 ARTNQ5T4W7 220 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 PIK3R6Q5UE93 754 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 SPECC1LQ69YQ0 1117 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 GRAMD4Q6IC98 578 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 ACAD10Q6JQN1 1059 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 DNAAF5Q86Y56 855 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 MCOLN2Q8IZK6 566 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 C3orf20Q8ND61 904 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 RPLP0P6Q8NHW5 317 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 WFDC5Q8TCV5 224 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 CPLX3Q8WVH0 158 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 EXOC4Q96A65 974 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 CFAP57Q96MR6 1250 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 XPO6Q96QU8 1125 aaKnown RBP10.17□□□□□ -0.78
CLK3-220ENST00000567992 TBCBQ99426 244 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 IRX2Q9BZI1 471 aaPredicted RBP10.17□□□□□ -0.78
CLK3-220ENST00000567992 FAM86C1Q9NVL1 165 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 ARHGEF38Q9NXL2 777 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 RRN3Q9NYV6 651 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 COX16Q9P0S2 106 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 STAP1Q9ULZ2 295 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 NENFQ9UMX5 172 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 SLC27A6Q9Y2P4 619 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 ZNF292O60281 2723 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 MYO18AQ92614 2054 aaKnown RBP10.16□□□□□ -0.78
CLK3-220ENST00000567992 LAMTOR5O43504 91 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 ADAM23O75077 832 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 ENDOD1O94919 500 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 ADCY5O95622 1261 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 APOEP02649 317 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 TPM3P06753 285 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 GZMAP12544 262 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 HNRNPLP14866 589 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLK3-220ENST00000567992 TACR2P21452 398 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 TNFAIP3P21580 790 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 RRM1P23921 792 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 HLA-FP30511 346 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 HNRNPH3P31942 346 aaKnown RBP10.16□□□□□ -0.78
CLK3-220ENST00000567992 CCR1P32246 355 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 GBP1P32455 592 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 TNFRSF4P43489 277 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 DGKGP49619 791 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 RPS24P62847 133 aaKnown RBP10.16□□□□□ -0.78
CLK3-220ENST00000567992 DMWDQ09019 674 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 NME3Q13232 169 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 GEN1Q17RS7 908 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 ZNF528Q3MIS6 628 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 CCDC14Q49A88 953 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 MPPE1Q53F39 396 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 C2orf27AQ580R0 203 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 C10orf76Q5T2E6 689 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 EMC10Q5UCC4 262 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 RAP1GAP2Q684P5 730 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 WDR59Q6PJI9 974 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLK3-220ENST00000567992 IL17RCQ8NAC3 791 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 HJURPQ8NCD3 748 aaPredicted RBP10.16□□□□□ -0.78
CLK3-220ENST00000567992 DDI1Q8WTU0 396 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 RXFP2Q8WXD0 754 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 LMLNQ96KR4 655 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 BTN2A3PQ96KV6 586 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 PHOX2BQ99453 314 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 DNAJC7Q99615 494 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 ZDHHC4Q9NPG8 344 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLK3-220ENST00000567992 ARHGAP20Q9P2F6 1191 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 LUC7L2Q9Y383 392 aaKnown RBP10.16□□□□□ -0.78
CLK3-220ENST00000567992 STARD13Q9Y3M8 1113 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLK3-220ENST00000567992 HS3ST4Q9Y661 456 aa10.16□□□□□ -0.78
CLK3-220ENST00000567992 DOCK4Q8N1I0 1966 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 NYNRINQ9P2P1 1898 aaKnown RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 TBC1D3BA6NDS4 549 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 SIGLEC16A6NMB1 481 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 TMCO5BA8MYB1 307 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 ATMINO43313 823 aaPredicted RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 TBL1XO60907 577 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 PAGE1O75459 146 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 CYBBP04839 570 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 SERPING1P05155 500 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 SLC2A3P11169 496 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 KRT3P12035 628 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 RFC1P35251 1148 aaPredicted RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 GGCXP38435 758 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 NBL1P41271 181 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 PTPN9P43378 593 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 CXCL12P48061 93 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 IRAK1P51617 712 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 RPL7AP62424 266 aaKnown RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 MRPS21P82921 87 aaKnown RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 OGDHQ02218 1023 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 CSTF1Q05048 431 aaKnown RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 TBX2Q13207 712 aaPredicted RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 C15orf59Q2T9L4 293 aaPredicted RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 C5orf22Q49AR2 442 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 MPP7Q5T2T1 576 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 SH3PXD2AQ5TCZ1 1133 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms