RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 BTBD8Q5XKL5 378 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 SCARA5Q6ZMJ2 495 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 TRMT11Q7Z4G4 463 aaKnown RBP14.67□□□□□ -0.06
LDLR-213ENST00000560502 PIP4P1Q86T03 277 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 MIB1Q86YT6 1006 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 ZNF513Q8N8E2 541 aaPredicted RBP14.67□□□□□ -0.06
LDLR-213ENST00000560502 NAT16Q8N8M0 369 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 SEMA4DQ92854 862 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 ELMO3Q96BJ8 720 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 TNIP3Q96KP6 325 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 SMOQ99835 787 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 DESI2Q9BSY9 194 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 MED10Q9BTT4 135 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 NUSAP1Q9BXS6 441 aaKnown RBP14.67□□□□□ -0.06
LDLR-213ENST00000560502 CSNK1G1Q9HCP0 422 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 UBE2TQ9NPD8 197 aaPredicted RBP14.67□□□□□ -0.06
LDLR-213ENST00000560502 CALCOCO1Q9P1Z2 691 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 DEC1Q9P2X7 70 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 ZMIZ1Q9ULJ6 1067 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 ATRXP46100 2492 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 A0A1W2PQF6 199 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 TBC1D3BA6NDS4 549 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 UPK3BL1B0FP48 263 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 UPK3BL2E5RIL1 263 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 TRIM24O15164 1050 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 KIF5CO60282 957 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 CACNG3O60359 315 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 TLR5O60602 858 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 AP1G2O75843 785 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 BEST1O76090 585 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 MAPK8P45983 427 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 ETF1P62495 437 aaKnown RBP14.66□□□□□ -0.06
LDLR-213ENST00000560502 SEMA3BQ13214 749 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 PREPLQ4J6C6 727 aaPredicted RBP14.66□□□□□ -0.06
LDLR-213ENST00000560502 HTR3DQ70Z44 454 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 KIAA1328Q86T90 577 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 ACOT1Q86TX2 421 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 ARHGEF19Q8IW93 802 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 FAM71AQ8IYT1 594 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 PPM1KQ8N3J5 372 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 SCNM1Q9BWG6 230 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 CAPN10Q9HC96 672 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 MARK1Q9P0L2 795 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 HMGXB4Q9UGU5 601 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 AJAP1Q9UKB5 411 aaPredicted RBP14.66□□□□□ -0.06
LDLR-213ENST00000560502 RALYQ9UKM9 306 aaKnown RBP14.66□□□□□ -0.06
LDLR-213ENST00000560502 PAXBP1Q9Y5B6 917 aa14.66□□□□□ -0.06
LDLR-213ENST00000560502 TMEM8BA6NDV4 472 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 ASS1P00966 412 aaKnown RBP14.65□□□□□ -0.06
LDLR-213ENST00000560502 IRF1P10914 325 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 CCDC130P13994 396 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 HOXB2P14652 356 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 NTSR1P30989 418 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 BPIFB4P59827 614 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 YWHAEP62258 255 aaKnown RBP14.65□□□□□ -0.06
LDLR-213ENST00000560502 SGSM1Q2NKQ1 1148 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 ANO4Q32M45 955 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 EGFLAMQ63HQ2 1017 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 GRAMD4Q6IC98 578 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 GJB7Q6PEY0 223 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 SLC36A4Q6YBV0 504 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 CRYBG2Q8N1P7 616 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 PGBD3Q8N328 593 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 ACRBPQ8NEB7 543 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 KIF18AQ8NI77 898 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 SLC2A14Q8TDB8 520 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 GABRG3Q99928 467 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 KLF16Q9BXK1 252 aaPredicted RBP14.65□□□□□ -0.06
LDLR-213ENST00000560502 CYLDQ9NQC7 956 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 INTUQ9ULD6 942 aa14.65□□□□□ -0.06
LDLR-213ENST00000560502 REXO2Q9Y3B8 237 aaKnown RBP14.65□□□□□ -0.06
LDLR-213ENST00000560502 IGHV1OR15-9A0A0B4J2B8 117 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 PJA2O43164 708 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 PLEKP08567 350 aaPredicted RBP14.64□□□□□ -0.07
LDLR-213ENST00000560502 SERPINF2P08697 491 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 ASPAP45381 313 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 RPL6Q02878 288 aaKnown RBP14.64□□□□□ -0.07
LDLR-213ENST00000560502 PTK2Q05397 1052 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 KIF5AQ12840 1032 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 ORC1Q13415 861 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 ARHGAP44Q17R89 818 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 DUOXA1Q1HG43 343 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 GPRIN1Q7Z2K8 1008 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 UNC93AQ86WB7 457 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 CEP76Q8TAP6 659 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 KREMEN1Q96MU8 473 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 ACOX2Q99424 681 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 SYT11Q9BT88 431 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 FBXO44Q9H4M3 255 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 FSCN3Q9NQT6 498 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 TLR8Q9NR97 1041 aaKnown RBP14.64□□□□□ -0.07
LDLR-213ENST00000560502 DNAJC17Q9NVM6 304 aaKnown RBP14.64□□□□□ -0.07
LDLR-213ENST00000560502 OSER1Q9NX31 292 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 SLC6A14Q9UN76 642 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 NEUROG3Q9Y4Z2 214 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 PCDHA13Q9Y5I0 950 aa14.64□□□□□ -0.07
LDLR-213ENST00000560502 BTNL10A8MVZ5 291 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 HHLA1C9JL84 531 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 NEDD8-MDP1E9PL57 170 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 TBX18O95935 607 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms