RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 PIK3R6Q5UE93 754 aa16.98■□□□□ 0.31
VPS29-207ENST00000549970 NADSYN1Q6IA69 706 aa16.98■□□□□ 0.31
VPS29-207ENST00000549970 SLC41A1Q8IVJ1 513 aa16.98■□□□□ 0.31
VPS29-207ENST00000549970 WFDC5Q8TCV5 224 aa16.98■□□□□ 0.31
VPS29-207ENST00000549970 WFIKKN2Q8TEU8 576 aa16.98■□□□□ 0.31
VPS29-207ENST00000549970 STK32AQ8WU08 396 aa16.98■□□□□ 0.31
VPS29-207ENST00000549970 FCRL2Q96LA5 508 aaPredicted RBP16.98■□□□□ 0.31
VPS29-207ENST00000549970 HSPA12BQ96MM6 686 aa16.98■□□□□ 0.31
VPS29-207ENST00000549970 SLC4A5Q9BY07 1137 aa16.98■□□□□ 0.31
VPS29-207ENST00000549970 STIM2Q9P246 746 aa16.98■□□□□ 0.31
VPS29-207ENST00000549970 GGA2Q9UJY4 613 aa16.98■□□□□ 0.31
VPS29-207ENST00000549970 GTPBP10A4D1E9 387 aaKnown RBP16.97■□□□□ 0.31
VPS29-207ENST00000549970 CDX4O14627 284 aaPredicted RBP16.97■□□□□ 0.31
VPS29-207ENST00000549970 KCNK5O95279 499 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 MOCS2O96007 188 aaPredicted RBP16.97■□□□□ 0.31
VPS29-207ENST00000549970 PABPC1P11940 636 aaKnown RBP16.97■□□□□ 0.31
VPS29-207ENST00000549970 CD6P30203 668 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 MAPK8P45983 427 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 LMAN2Q12907 356 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 PDCLQ13371 301 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 MAN2A1Q16706 1144 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 UAP1L1Q3KQV9 507 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 FNDC3BQ53EP0 1204 aaKnown RBP16.97■□□□□ 0.31
VPS29-207ENST00000549970 HSP90AA4PQ58FG1 418 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 SYPL2Q5VXT5 272 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 PEAR1Q5VY43 1037 aaPredicted RBP16.97■□□□□ 0.31
VPS29-207ENST00000549970 PSAPL1Q6NUJ1 521 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 SLC23A3Q6PIS1 610 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 TAC4Q86UU9 113 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 TMPRSS6Q8IU80 811 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 AHI1Q8N157 1196 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 SHC3Q92529 594 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 SIPA1Q96FS4 1042 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 NUP62CLQ9H1M0 184 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 THAP9Q9H5L6 903 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 FSCN3Q9NQT6 498 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 TJP2Q9UDY2 1190 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 AJAP1Q9UKB5 411 aaPredicted RBP16.97■□□□□ 0.31
VPS29-207ENST00000549970 TLR6Q9Y2C9 796 aa16.97■□□□□ 0.31
VPS29-207ENST00000549970 TYW5A2RUC4 315 aaKnown RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 IRAK2O43187 625 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 PRKCSHP14314 528 aaPredicted RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 ENGP17813 658 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 CD70P32970 193 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 HOXD12P35452 270 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 NOVA1P51513 510 aaKnown RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 COPAP53621 1224 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 NNTQ13423 1086 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 DUOXA1Q1HG43 343 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 N4BP2L1Q5TBK1 243 aaPredicted RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 MBLAC2Q68D91 279 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 TMEM110Q86TL2 294 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 ADIPOR2Q86V24 386 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 PASD1Q8IV76 773 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 MFN1Q8IWA4 741 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 FAM114A1Q8IWE2 563 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 RGL4Q8IZJ4 473 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 ZNF366Q8N895 744 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.96■□□□□ 0.31
VPS29-207ENST00000549970 HJURPQ8NCD3 748 aaPredicted RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 PRCCQ92733 491 aaPredicted RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 AZIN2Q96A70 460 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 MYEOVQ96EZ4 313 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 TOE1Q96GM8 510 aaKnown RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 SLC39A13Q96H72 371 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 PRICKLE1Q96MT3 831 aaPredicted RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 CNTNAP3BQ96NU0 1288 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 DDX50Q9BQ39 737 aaKnown RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 TRIM62Q9BVG3 475 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 CNTNAP3Q9BZ76 1288 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 NUCKS1Q9H1E3 243 aaKnown RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 POPDC2Q9HBU9 364 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 USP36Q9P275 1121 aaKnown RBP16.96■□□□□ 0.31
VPS29-207ENST00000549970 PLA2G4CQ9UP65 541 aa16.96■□□□□ 0.31
VPS29-207ENST00000549970 ADAMTS9Q9P2N4 1935 aa16.96■□□□□ 0.3
VPS29-207ENST00000549970 ASCC3Q8N3C0 2202 aaKnown RBP16.95■□□□□ 0.3
VPS29-207ENST00000549970 KCNJ18B7U540 433 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 ACADMP11310 421 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 ANP32AP39687 249 aaKnown RBP16.95■□□□□ 0.3
VPS29-207ENST00000549970 RPS24P62847 133 aaKnown RBP16.95■□□□□ 0.3
VPS29-207ENST00000549970 MPP7Q5T2T1 576 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 BEND5Q7L4P6 421 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 KIAA0907Q7Z7F0 614 aaPredicted RBP16.95■□□□□ 0.3
VPS29-207ENST00000549970 METTL3Q86U44 580 aaKnown RBP16.95■□□□□ 0.3
VPS29-207ENST00000549970 CEP76Q8TAP6 659 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 ZNF419Q96HQ0 510 aaPredicted RBP16.95■□□□□ 0.3
VPS29-207ENST00000549970 GPR174Q9BXC1 333 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 IRX2Q9BZI1 471 aaPredicted RBP16.95■□□□□ 0.3
VPS29-207ENST00000549970 SIX2Q9NPC8 291 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 ITM2CQ9NQX7 267 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 WSB2Q9NYS7 404 aaPredicted RBP16.95■□□□□ 0.3
VPS29-207ENST00000549970 DACH1Q9UI36 760 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 XPO7Q9UIA9 1087 aaKnown RBP16.95■□□□□ 0.3
VPS29-207ENST00000549970 DNAJC12Q9UKB3 198 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 SLC6A14Q9UN76 642 aa16.95■□□□□ 0.3
VPS29-207ENST00000549970 TPRP12270 2363 aaKnown RBP16.95■□□□□ 0.3
VPS29-207ENST00000549970 MUC22E2RYF6 1773 aaPredicted RBP16.94■□□□□ 0.3
VPS29-207ENST00000549970 GIPC1O14908 333 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 TRUB2O95900 331 aaKnown RBP16.94■□□□□ 0.3
VPS29-207ENST00000549970 APOEP02649 317 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms