RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ZFYVE27Q5T4F4 411 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 MTSS1LQ765P7 747 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 RASGEF1CQ8N431 466 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 ITFG1Q8TB96 612 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 ZSCAN18Q8TBC5 510 aaPredicted RBP16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 ACTRT1Q8TDG2 376 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 TSC1Q92574 1164 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 HLA-CQ95604 372 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 ACSF2Q96CM8 615 aaPredicted RBP16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 ASB16Q96NS5 453 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 SLC22A12Q96S37 553 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 FRMD8P1Q9BZ68 369 aaPredicted RBP16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 DHX35Q9H5Z1 703 aaKnown RBP16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 PCDH18Q9HCL0 1135 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 STIM2Q9P246 746 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 OR12D3Q9UGF7 316 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 RAD54BQ9Y620 910 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 CHD5Q8TDI0 1954 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 IGLV3-10A0A075B6K4 115 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 TYW5A2RUC4 315 aaKnown RBP16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 LEFTY2O00292 366 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 TJP3O95049 919 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 TCF4P15884 667 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 CORO1AP31146 461 aaKnown RBP16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 CKAP4Q07065 602 aaKnown RBP16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 DPYSL3Q14195 570 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 ZNF77Q15935 545 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 WHAMMP3Q1A5X7 153 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 SMTNL2Q2TAL5 461 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 KCNT1Q5JUK3 1230 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 RABGAP1LQ5R372 815 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 MPP7Q5T2T1 576 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 MANEALQ5VSG8 457 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 SPOCD1Q6ZMY3 1216 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 GET4Q7L5D6 327 aaPredicted RBP16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 ARID3BQ8IVW6 561 aaPredicted RBP16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 DEPDC1BQ8WUY9 529 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 USP13Q92995 863 aaPredicted RBP16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 NXPE3Q969Y0 559 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 CATSPERBQ9H7T0 1116 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 HOMER3Q9NSC5 361 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 EPS15L1Q9UBC2 864 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 CDC23Q9UJX2 597 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 PACSIN2Q9UNF0 486 aaPredicted RBP16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 HS3ST4Q9Y661 456 aa16.56■□□□□ 0.24
PRPF40A-212ENST00000545856 F5H5T6 163 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 PGRMC1O00264 195 aaKnown RBP16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 GREM1O60565 184 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 GJA1P17302 382 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 SERPINB6P35237 376 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 CDKN2BP42772 138 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 PAFAH1B1P43034 410 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 MARCKSL1P49006 195 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 LEXMQ3ZCV2 418 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 MS4A13Q5J8X5 152 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 DNTTIP2Q5QJE6 756 aaKnown RBP16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 SZT2Q5T011 3432 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 STXBP5Q5T5C0 1151 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 DAB2IPQ5VWQ8 1189 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 TXNRD3NBQ6F5E7 133 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 BZW1Q7L1Q6 419 aaKnown RBP16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 CCDC50Q8IVM0 306 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 LZTR1Q8N653 840 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 TTC13Q8NBP0 860 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 ADAMTS19Q8TE59 1207 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 SH3RF2Q8TEC5 729 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 HSPH1Q92598 858 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 TBC1D31Q96DN5 1066 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 RPGRIP1Q96KN7 1286 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 CYP2S1Q96SQ9 504 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 PRMT1Q99873 361 aaKnown RBP16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 OSBPL8Q9BZF1 889 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 CFAP97Q9P2B7 532 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 USP15Q9Y4E8 981 aaPredicted RBP16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 REV3LO60673 3130 aa16.55■□□□□ 0.24
PRPF40A-212ENST00000545856 hCG_1818297A0A087WSY0 165 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 C3orf70A6NLC5 250 aaPredicted RBP16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 WASH4PA8MWX3 477 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 EEF2KO00418 725 aaKnown RBP16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 FANCGO15287 622 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 PYGMP11217 842 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 GJC1P36383 396 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 KCNQ1P51787 676 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 TPI1P60174 286 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 RAB6CQ53S08 254 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 PPP6R3Q5H9R7 873 aaPredicted RBP16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 PIK3R6Q5UE93 754 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 EP400NLQ6ZTU2 488 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 BBS12Q6ZW61 710 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 Q7L0L9 218 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 CHST9Q7L1S5 443 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 CHSY1Q86X52 802 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 CPNE8Q86YQ8 564 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 PLCD3Q8N3E9 789 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 RAPGEF5Q92565 580 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 ELSPBP1Q96BH3 223 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 KCTD15Q96SI1 283 aaPredicted RBP16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 CALN1Q9BXU9 219 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 MAK16Q9BXY0 300 aaKnown RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms