RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 SCYL2Q6P3W7 929 aa14.14□□□□□ -0.15
VPS33A-208ENST00000543633 LRRC8BQ6P9F7 803 aa14.14□□□□□ -0.15
VPS33A-208ENST00000543633 LBX2Q6XYB7 198 aa14.14□□□□□ -0.15
VPS33A-208ENST00000543633 DTNBP1Q96EV8 351 aa14.14□□□□□ -0.15
VPS33A-208ENST00000543633 PIWIL1Q96J94 861 aaKnown RBP14.14□□□□□ -0.15
VPS33A-208ENST00000543633 EPB41L1Q9H4G0 881 aa14.14□□□□□ -0.15
VPS33A-208ENST00000543633 ZNF395Q9H8N7 513 aaPredicted RBP14.14□□□□□ -0.15
VPS33A-208ENST00000543633 VCX3AQ9NNX9 186 aa14.14□□□□□ -0.15
VPS33A-208ENST00000543633 GPATCH2LQ9NWQ4 482 aa14.14□□□□□ -0.15
VPS33A-208ENST00000543633 SF3B1O75533 1304 aaKnown RBP eCLIP14.13□□□□□ -0.15
VPS33A-208ENST00000543633 A0A0A0MRY4 1105 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 SOWAHBA6NEL2 793 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 A6NJR5 290 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 RTN3O95197 1032 aaPredicted RBP14.13□□□□□ -0.15
VPS33A-208ENST00000543633 ALDOAP04075 364 aaKnown RBP14.13□□□□□ -0.15
VPS33A-208ENST00000543633 UBTFL6P0CB48 400 aaPredicted RBP14.13□□□□□ -0.15
VPS33A-208ENST00000543633 UQCRBP14927 111 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 MX2P20592 715 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 GARSP41250 739 aaKnown RBP14.13□□□□□ -0.15
VPS33A-208ENST00000543633 PDE1BQ01064 536 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 CCDC153Q494R4 210 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 LIN52Q52LA3 116 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 RAB6CQ53S08 254 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 FSCBQ5H9T9 825 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 MAP1SQ66K74 1059 aaPredicted RBP14.13□□□□□ -0.15
VPS33A-208ENST00000543633 HEATR6Q6AI08 1181 aaKnown RBP14.13□□□□□ -0.15
VPS33A-208ENST00000543633 ZCCHC23Q6ZST2 131 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 MPP5Q8N3R9 675 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 CENPIQ92674 756 aaPredicted RBP14.13□□□□□ -0.15
VPS33A-208ENST00000543633 SPATA13Q96N96 652 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 TUBGCP5Q96RT8 1024 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 C11orf84Q9BUA3 381 aaPredicted RBP14.13□□□□□ -0.15
VPS33A-208ENST00000543633 KLHL4Q9C0H6 718 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 RAB6CQ9H0N0 254 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 XPNPEP3Q9NQH7 507 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 NDUFA13Q9P0J0 144 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 PPP2R3BQ9Y5P8 575 aa14.13□□□□□ -0.15
VPS33A-208ENST00000543633 AP1G1O43747 822 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 H2AFYO75367 372 aaKnown RBP14.12□□□□□ -0.15
VPS33A-208ENST00000543633 CYP2C8P10632 490 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 HDAC4P56524 1084 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 PDE1CQ14123 709 aaPredicted RBP14.12□□□□□ -0.15
VPS33A-208ENST00000543633 FRG1Q14331 258 aaKnown RBP14.12□□□□□ -0.15
VPS33A-208ENST00000543633 GPR162Q16538 588 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 CA9Q16790 459 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 CELF3Q5SZQ8 465 aaKnown RBP14.12□□□□□ -0.15
VPS33A-208ENST00000543633 METTL21CQ5VZV1 264 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 RFX8Q6ZV50 586 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 RAPH1Q70E73 1250 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 TMEM192Q8IY95 271 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 NME8Q8N427 588 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 GSTCDQ8NEC7 633 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 KCNK16Q96T55 309 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 APOL6Q9BWW8 343 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 SPATA16Q9BXB7 569 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 CDH22Q9UJ99 828 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 COMMD3-BMI1R4GMX3 469 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 KAT6AQ92794 2004 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 ARHGAP42A6NI28 874 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 NOP56O00567 594 aaKnown RBP14.12□□□□□ -0.15
VPS33A-208ENST00000543633 TPP1O14773 563 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 ITM2AO43736 263 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 OPHN1O60890 802 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 DGKIO75912 1065 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 STK10O94804 968 aaKnown RBP14.12□□□□□ -0.15
VPS33A-208ENST00000543633 MAGEA12P43365 314 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 IDH3AP50213 366 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 HK2P52789 917 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 POLE2P56282 527 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 INHBEP58166 350 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 ABCE1P61221 599 aaKnown RBP14.12□□□□□ -0.15
VPS33A-208ENST00000543633 RPL10AP62906 217 aaKnown RBP14.12□□□□□ -0.15
VPS33A-208ENST00000543633 MED21Q13503 144 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 CUL3Q13618 768 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 CCNIQ14094 377 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 PDPK2PQ6A1A2 396 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 DPY19L2Q6NUT2 758 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 KCNT2Q6UVM3 1135 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 SLC26A9Q7LBE3 791 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 RASSF3Q86WH2 238 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 TMEM126BQ8IUX1 230 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 PSTKQ8IV42 348 aaKnown RBP14.12□□□□□ -0.15
VPS33A-208ENST00000543633 KHSRPQ92945 711 aaKnown RBP eCLIP14.12□□□□□ -0.15
VPS33A-208ENST00000543633 SORT1Q99523 831 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 FERMT1Q9BQL6 677 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 SMARCAD1Q9H4L7 1026 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 COPG2Q9UBF2 871 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 HESX1Q9UBX0 185 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 CDY2AQ9Y6F7 541 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 CDY1Q9Y6F8 540 aa14.12□□□□□ -0.15
VPS33A-208ENST00000543633 CITO14578 2027 aa14.11□□□□□ -0.15
VPS33A-208ENST00000543633 MEI4A8MW99 385 aa14.11□□□□□ -0.15
VPS33A-208ENST00000543633 TMEM114B3SHH9 223 aa14.11□□□□□ -0.15
VPS33A-208ENST00000543633 ITGA2BP08514 1039 aa14.11□□□□□ -0.15
VPS33A-208ENST00000543633 SLC25A3Q00325 362 aa14.11□□□□□ -0.15
VPS33A-208ENST00000543633 GBE1Q04446 702 aa14.11□□□□□ -0.15
VPS33A-208ENST00000543633 PDCD2Q16342 344 aaPredicted RBP14.11□□□□□ -0.15
VPS33A-208ENST00000543633 TFB1MQ8WVM0 346 aaKnown RBP14.11□□□□□ -0.15
VPS33A-208ENST00000543633 HTR3CQ8WXA8 447 aa14.11□□□□□ -0.15
VPS33A-208ENST00000543633 KLRG1Q96E93 195 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms