RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 RHBDL3P58872 404 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 RPL26P61254 145 aaKnown RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 IFI35P80217 286 aaPredicted RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 CDR2Q01850 454 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 SLC34A1Q06495 639 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 AP1B1Q10567 949 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 COASYQ13057 564 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 TNFAIP1Q13829 316 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 PLS1Q14651 629 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 TMEM119Q4V9L6 283 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 ZCWPW2Q504Y3 356 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 HSP90AA5PQ58FG0 334 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 SLC45A4Q5BKX6 768 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 APOBEC3HQ6NTF7 200 aaKnown RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 CCDC62Q6P9F0 684 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 ETV3LQ6ZN32 361 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 RGS9BPQ6ZS82 235 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 EPM2AIP1Q7L775 607 aaPredicted RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 ZNF571Q7Z3V5 609 aaPredicted RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 EXOC3L1Q86VI1 746 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 NELFCDQ8IXH7 590 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 ZC3H3Q8IXZ2 948 aaKnown RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 RNF168Q8IYW5 571 aaPredicted RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 ZNF444Q8N0Y2 327 aaPredicted RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 SPICE1Q8N0Z3 855 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 VPS52Q8N1B4 723 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 FITM2Q8N6M3 262 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 SLC35G2Q8TBE7 412 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 FBXO25Q8TCJ0 367 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 PRCCQ92733 491 aaPredicted RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 SLCO2A1Q92959 643 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 MCUR1Q96AQ8 359 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 CFAP57Q96MR6 1250 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 DIRC2Q96SL1 478 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 TRIM51Q9BSJ1 452 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 IDI2Q9BXS1 227 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 STK33Q9BYT3 514 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 ADAM7Q9H2U9 754 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 NSUN3Q9H649 340 aaKnown RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 RNF181Q9P0P0 153 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 THEGQ9P2T0 379 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 ASH2LQ9UBL3 628 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 DNAJB4Q9UDY4 337 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 LGALS13Q9UHV8 139 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 ITGB1BP2Q9UKP3 347 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 SNX24Q9Y343 169 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 SH3BP1Q9Y3L3 701 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 ZNF541Q9H0D2 1346 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 RPTORQ8N122 1335 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 ZNF891A8MT65 544 aaPredicted RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 ALG1L2C9J202 215 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 HRKO00198 91 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 PDXKO00764 312 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 ATP2A1O14983 1001 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 CLASP2O75122 1294 aaKnown RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 PEX11AO75192 247 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 ENTPD3O75355 529 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 FKBP9O95302 570 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 TTC4O95801 387 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 EFEMP2O95967 443 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 ATP5BP06576 529 aaKnown RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 TSPY3P0CV98 308 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 TSPY8P0CW00 308 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 CCDC166P0CW27 439 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 PFKLP17858 780 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 NR2F2P24468 414 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 ADCY7P51828 1080 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 CACNA2D1P54289 1103 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 GALCP54803 685 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 SRSF3P84103 164 aaKnown RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 TMPRSS15P98073 1019 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 XIAPP98170 497 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 RCN2Q14257 317 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 TMEM132BQ14DG7 1078 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 DLGAP5Q15398 846 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 TARBP2Q15633 366 aaKnown RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 CYP1B1Q16678 543 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 ATP13A4Q4VNC1 1196 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 HERC4Q5GLZ8 1057 aaPredicted RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 HHATQ5VTY9 493 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 RNF219Q5W0B1 726 aaPredicted RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 IQSEC1Q6DN90 963 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 CCDC137Q6PK04 289 aaKnown RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 ZDHHC24Q6UX98 284 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 FKBP9P1Q75LS8 142 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 FAM83AQ86UY5 434 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 CCDC25Q86WR0 208 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 KIF2BQ8N4N8 673 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 AFAP1L2Q8N4X5 818 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 ANKRD42Q8N9B4 389 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 MGARPQ8TDB4 240 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 SDR42E1Q8WUS8 393 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 EEF2KMTQ96G04 330 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 SNF8Q96H20 258 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 ZBED3Q96IU2 234 aaPredicted RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 ZNF333Q96JL9 665 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 SMC6Q96SB8 1091 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 IWS1Q96ST2 819 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 DDX23Q9BUQ8 820 aaKnown RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 PACSIN1Q9BY11 444 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms